Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan09g1563 | ATGGCGGAGCCAGAAGGCTTTGAAACTAACCAACTCGGAAGCTCGAAGGCTACTCTGGGGCAAGAGGATGATGAGGAAGAAGAGATGGAAGATTCGGAGGATGAATCAGAGGTGGAGTTGGAGGAACAAGGAGTGAGGGGGTTGAGGACCGGTTCGTCGGTTAGTGAAGCTGCGGTTAGGGGGTCTAGTTCTGAAACCCTAGCGGCGCCTTCTGCGAATCAGTCATCGGAGAACGGTCGGTCTGATGGTTTGCCTGTCAATTCTGCTGCGGAGTCTGAATTGAAGCAAGCTCCATCCTCCCACAATGAGCCTTTGACTGTTGAAGCAACCCAGACTGATCAGATGCAAGAACAAAACCAACTTCAGGTGTCAATATGTAAAGGACCTGATTCAGACCGATCACCAACTTCAGTTACCCAGTCTATCTCATCCTCCGCAAGCCCAAGTTTATCCGAACATAAACTGTCACCTAAGAAGGTTCATAAAGAATGTAAGCCAGAACCAAGCCAGAAAAAATCTTCCGACCATAAAACTGCATTCTCTGTTCCCAATGTTAGGACACCTGCTTCTGATGGTTACAATTGGAGGAAATATGGTCAGAAGCAAGTGAAGAGTCCCAAGGGTTCACGTAGCTATTACAAGTGTACATATTCTGAATGCTTTGCTAAGAAGATTGAATGTTGTGATCACTTAGGCCTTATAACGGAGGTTGTTTACAAGAGCCAACATAGCCATGATCCGCCTAGGAAGATTAACAACCCCAAGGAAAGCAAGCTTGTGCCTTATGTTGAGCCTGTGGTTAAAAAAATCATTGCAGAACATTCCAGAAGAATAATTAATGATTCAGATCCTCCTACGCCTTCAAAAGAACCTTTACGGGACACAGCTTTAGTCCTTGAAAGAAAACGACAGTACTCAAATGACTCTGATGGAAATGATGAATCTAAAATCAAGGATGAGAATGACAACGAATCTGAGACAAAACAAAAAGTTAAGAAAAGCAGTGCGGGATATTCAGGTAGTCCAATAAAACCTGGAAAGAAACCCAAATTTGTGGTGCATGCAGCCGGTGATGTGGGAATCTCGGGTGATGGATACAGATGGCGCAAGTATGGTCAGAAAATGGTGAAAGGAAATCCTCATCCTAGGAACTACTACCGATGTACCTCTGCTGGGTGTCCAGTCCGTAAGCATATCGAATCAGCTGTAGAAAATCCAAATGCAGTGATTATAACATACAAGGGAGTTCATGATCATGACATGCCTGTACCGAAGAAACGACATGGTCCACCAAGTGCACCTCTTGTAGCTGCTGCAGCTCCAGCCTCCATGGGCAATATGCAACCGAAGAAAACAGACGCAGTTCAGAGCCAAATTTCTTCAACACAGTGGTCTGTGGATGCTGAAGGAGAGTTGACTGGTGAGGCCTTGGACCTTGGAGGTGAAAAGGCAATGGAATCTGCTCGAACACTTTTGAGCATTGGATTTGAAATCAAGCCTTGCTGA | 1506 | 45.29 | MAEPEGFETNQLGSSKATLGQEDDEEEEMEDSEDESEVELEEQGVRGLRTGSSVSEAAVRGSSSETLAAPSANQSSENGRSDGLPVNSAAESELKQAPSSHNEPLTVEATQTDQMQEQNQLQVSICKGPDSDRSPTSVTQSISSSASPSLSEHKLSPKKVHKECKPEPSQKKSSDHKTAFSVPNVRTPASDGYNWRKYGQKQVKSPKGSRSYYKCTYSECFAKKIECCDHLGLITEVVYKSQHSHDPPRKINNPKESKLVPYVEPVVKKIIAEHSRRIINDSDPPTPSKEPLRDTALVLERKRQYSNDSDGNDESKIKDENDNESETKQKVKKSSAGYSGSPIKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIESAVENPNAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMGNMQPKKTDAVQSQISSTQWSVDAEGELTGEALDLGGEKAMESARTLLSIGFEIKPC | 501 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 67511805 | 67517156 | + | Tan0022416.1 | Tan09g1563 | 763906 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan09g1563 | 501 | Gene3D | WRKY domain | 347 | 423 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Tan09g1563 | 501 | Gene3D | WRKY domain | 174 | 249 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Tan09g1563 | 501 | MobiDBLite | consensus disorder prediction | 154 | 174 | - | - | |
| Tan09g1563 | 501 | Coils | Coil | 22 | 42 | - | - | |
| Tan09g1563 | 501 | ProSiteProfiles | WRKY domain profile. | 357 | 422 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Tan09g1563 | 501 | SUPERFAMILY | WRKY DNA-binding domain | 187 | 248 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Tan09g1563 | 501 | ProSiteProfiles | WRKY domain profile. | 190 | 248 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Tan09g1563 | 501 | SMART | WRKY_cls | 362 | 421 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Tan09g1563 | 501 | SMART | WRKY_cls | 189 | 247 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Tan09g1563 | 501 | MobiDBLite | consensus disorder prediction | 298 | 331 | - | - | |
| Tan09g1563 | 501 | MobiDBLite | consensus disorder prediction | 21 | 40 | - | - | |
| Tan09g1563 | 501 | MobiDBLite | consensus disorder prediction | 55 | 85 | - | - | |
| Tan09g1563 | 501 | MobiDBLite | consensus disorder prediction | 92 | 152 | - | - | |
| Tan09g1563 | 501 | FunFam | WRKY transcription factor | 348 | 423 | - | - | |
| Tan09g1563 | 501 | MobiDBLite | consensus disorder prediction | 298 | 349 | - | - | |
| Tan09g1563 | 501 | MobiDBLite | consensus disorder prediction | 1 | 210 | - | - | |
| Tan09g1563 | 501 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 77 | 430 | IPR044810 | GO:0003700(InterPro) | |
| Tan09g1563 | 501 | Pfam | WRKY DNA -binding domain | 191 | 246 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Tan09g1563 | 501 | Pfam | WRKY DNA -binding domain | 364 | 420 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Tan09g1563 | 501 | SUPERFAMILY | WRKY DNA-binding domain | 358 | 422 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan09g1563 | Tan-Chr9:67511805 | Tan11g0459 | Tan-Chr11:3714800 | 5.20E-31 | dispersed | |
| Tan09g1563 | Tan-Chr9:67511805 | Tan08g2412 | Tan-Chr8:75363300 | 9.50E-41 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 28361 | PF03106 | WRKY | 6.40E-24 | CL0274 | Tan | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan09g1563 | - | - | - | 0.0 |