Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1578 ATGCAGCAAGGTGATCAGACGGGTCTAAGCTTGAGACCTGGTGGCGGTCGACCTAGACTCCTTGGTCCTCGCTCTGAGCATTCATCCTCTTCTTCCTCATCCTCTTCATCTTCTTTTGCCTTCGGTTCCTTTTCCTCTGATCTCCCTACCCTCCGTCCCCATGGCGGTCCTTCCGCTTCCTTTTCCGCGAAGACTGGAGATTCATGGTTTGAGGGTCGCGAGCGTGTTCGATATACCCGAGATCAGCTTTTGCAGCTTCGAGAGGTTGTGGAAGTTCCAGATGATATACTAAAACTTAAACGGGATATTGAAGTGGAAATTTTTGGCGAGGAACAAAGTTGGAGTCGTGTAGAGAGCAATCAACCTAATCAGTCTCAGAATCGCTATTCTGAGCCAGACAATCGTGACTGGCGTGGCCGTTCTGCCCAATTCTCTGCTTCCGGAGAGGAGAGGTCCAGGGAAACAATTCGAGATAGAGATGTTGGGGGTCACTTTGACTCTAGACAACAAGAGACAAATCTATTGAATCGTCAAGACTCACACTCATCTTGGACCCGGACCACTTCTAACCAAGGGGGAGGACCTCCTGCTCTAATCAAAGCTGAGGTACCATGGTCCGCTAGGAGAGGAAATCTCTCTGACAAGGATCGTGTCTTGAAGACCGTAAAGGGGATATTGAATAAGCTAACGCCAGAAAAGTTTGATCTCCTCAAGGGTCAGCTAATTGACTCTGGAATCACCTCCGCTGATATTTTGAAGGATGTCATTTCACTGATTTTTGACAAGGCTGTTCTTGAGCCCACATTTTGCCCCATGTATGCTCAATTGTGTTCTGATCTGAATCAGAAGCTACCTCAATTTCCCTCCGATGAACCTGGTGGTAGGGAAATTAATTTTAAACGAGTCCTCTTAAATATCTGTCAGGAGGCTTTTGAAGGTGCAGACAAGTTGAGGGAAGAGGTTAGGCAGATGACTTCCCCTGAGCAAGAGAGCGAGCGCAGAGATAAAGAAAAACTGTTCAAACTTCGTACTCTTGGAAATATTCGATTAATTGGAGAGCTTCTGAAGCAAAAGATGGTGCCTGAGAAGATTGTGCACCACATCGTGAAGGAACTTCTAGGACCGGATAACAAAACCTGTCCTGCTGAAGAAAACGTCGAGGCCATCTGTCAGGTCTTTAATACCATAGGTAAGCAGCTAGACGAGAACACAAAATCGCGTCGTATAAATGACATGTACTTTGGCCGATTGAAAGAATTGACTACACACTCTCAGTTGGCCCCACGATTGAAGTTCATGGTCCGTGATGTTCTTGATTTGCGTTCTAACAAATGGGTTCCTAGGCGTGAAGAGGTTAAAGCCAAAACTATTACTGAAATACATTCAGAGGCAGAAAAAAATCTGGGACTACGTCCAGGTGCTACTGTCAATATCAGAAATAGTCGTGGTGTTGTTGTGTCTGGTTCTCCTGGGAACGCCAGCTCTGGGGGCTTTCCTATGAATCGACCTGGTTTTGGGGGTATGATGCCTGGTATGCCAGGAACCAGGAAGATGCCTGGTATGCCAGGAATGGATAATGACAATTGGGAGGTACCTAGGGCCCGAACTATGCCTAGGGGGGCAGATGGATCTGGTATTCAGCCTGCTGGTCGTGGCCAGACACCGTTGGTTGGCAAAGCATCGACTTTGAATGCAAGGCTACTACCCCAGGGTACTGGTGGGCTCATTAGTAACAAGACTAGTGCTCTATTGCAAGGTACAGGAGCATCTACTACTACTCGTCCTGTTAACTTCGGTCAAGGGTTAGAGCCCTCTGGTCAGGTTCATAAACCTCCTATTACGGCCGCAACGGTCCTTCCACCTGCCGAGAGACCACAGATTCCAGCTACATCTCTTAAACCAAATGATCTCAAAAAGAAAACTCTCTCTCTTCTTGAAGAATATTTCAGCATTCGGATTTTGGATGAAGCTTTACAGTGCGTGGAAGAACTCATGTCACCAGCTTACCACCCTGAGGTTGTTAAAGAAGCCATTTCCTTAGCCCTAGAGAAAAGCCCACCTTGTGTTGAAGCAGTTGTAAAGTTTCTGGACTATTTACTCTCCAGGAAGGTTTTTACTGCTGGAGACGTTGGGACTGGATGTTTGCTTTATGCTTCGGTACTTGACGATGCTGGCATTGATTTACCAAAAGCCCCAATCAATTTTGGTGAGATAATTGGGAAACTTGTTATATCTGGTAGTTTGGATTTTCAGGTGGTGAAGGAGGTCCTTAAGAAGGTGGAAGATGACAGGTTCAGGAAAGACATATTTGATGCTGTCTTGAAGACGATTAGTTCTAATGTGTCTGGGCAAGGATTACTGGATTCATTGGCATCCGATATCGAGGCCTGTCGAAGTCTGGCATATTAA 2409 46.33 MQQGDQTGLSLRPGGGRPRLLGPRSEHSSSSSSSSSSSFAFGSFSSDLPTLRPHGGPSASFSAKTGDSWFEGRERVRYTRDQLLQLREVVEVPDDILKLKRDIEVEIFGEEQSWSRVESNQPNQSQNRYSEPDNRDWRGRSAQFSASGEERSRETIRDRDVGGHFDSRQQETNLLNRQDSHSSWTRTTSNQGGGPPALIKAEVPWSARRGNLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNQKLPQFPSDEPGGREINFKRVLLNICQEAFEGADKLREEVRQMTSPEQESERRDKEKLFKLRTLGNIRLIGELLKQKMVPEKIVHHIVKELLGPDNKTCPAEENVEAICQVFNTIGKQLDENTKSRRINDMYFGRLKELTTHSQLAPRLKFMVRDVLDLRSNKWVPRREEVKAKTITEIHSEAEKNLGLRPGATVNIRNSRGVVVSGSPGNASSGGFPMNRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARTMPRGADGSGIQPAGRGQTPLVGKASTLNARLLPQGTGGLISNKTSALLQGTGASTTTRPVNFGQGLEPSGQVHKPPITAATVLPPAERPQIPATSLKPNDLKKKTLSLLEEYFSIRILDEALQCVEELMSPAYHPEVVKEAISLALEKSPPCVEAVVKFLDYLLSRKVFTAGDVGTGCLLYASVLDDAGIDLPKAPINFGEIIGKLVISGSLDFQVVKEVLKKVEDDRFRKDIFDAVLKTISSNVSGQGLLDSLASDIEACRSLAY 802
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 67587282 67593296 - Tan0020756.1 Tan09g1578 763921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1578 802 Gene3D - 630 795 - -
Tan09g1578 802 MobiDBLite consensus disorder prediction 113 130 - -
Tan09g1578 802 Gene3D - 210 445 - -
Tan09g1578 802 SUPERFAMILY ARM repeat 212 447 IPR016024 -
Tan09g1578 802 MobiDBLite consensus disorder prediction 1 66 - -
Tan09g1578 802 SUPERFAMILY ARM repeat 633 791 IPR016024 -
Tan09g1578 802 MobiDBLite consensus disorder prediction 167 194 - -
Tan09g1578 802 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 37 800 IPR045208 GO:0003729(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0016281(PANTHER)
Tan09g1578 802 SMART if4_15 219 444 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Tan09g1578 802 MobiDBLite consensus disorder prediction 150 166 - -
Tan09g1578 802 MobiDBLite consensus disorder prediction 112 198 - -
Tan09g1578 802 MobiDBLite consensus disorder prediction 24 45 - -
Tan09g1578 802 Pfam MA3 domain 637 749 IPR003891 -
Tan09g1578 802 SMART ma3_7 637 749 IPR003891 -
Tan09g1578 802 ProSiteProfiles MI domain profile. 636 758 IPR003891 -
Tan09g1578 802 MobiDBLite consensus disorder prediction 587 612 - -
Tan09g1578 802 FunFam Eukaryotic translation initiation factor isoform 4G-2 210 445 - -
Tan09g1578 802 Pfam MIF4G domain 219 444 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3540 Tan-Chr1:100545887 Tan09g1578 Tan-Chr9:67587282 6.80E-280 dispersed
Tan06g2241 Tan-Chr6:73228986 Tan09g1578 Tan-Chr9:67587282 3.70E-53 dispersed
Tan09g1578 Tan-Chr9:67587282 Tan10g0463 Tan-Chr10:3814604 3.20E-54 dispersed
Tan01g3539 Tan-Chr1:100545887 Tan09g1578 Tan-Chr9:67587282 1.40E-280 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1578 K03260 - csv:101207520 1308.89