Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1580 ATGGAAGCCAGCGCTGGACTTGTCGCTGGTTCTCACAACCGCAATGAGCTTGTTGTCATTCATGGCCATGAGGAGCCAAAGCCATTGAAGAACTTGGATGGTCAAGTTTGTGAGATCTGTGGTGATGAAGTGGGGCTTACTGTGGATGGTGATCTGTTTGTTGCCTGCAATGAATGTGGTTTTCCCGTCTGCAGACCTTGTTATGAATATGAAAGAAGAGAAGGAAGCCAACTGTGTCCTCAGTGTAAAACTAGATACAAGCGGCTCAAAGGGTGTCCAAGGGTCGAGGGAGATGACGACGAAGAAGACATAGATGACATTGAACATGAATTCAACATTGATGATGAAAGGAACAAGCACAGTCATATGGCAGAAGCTATGCTTCATGGAAAGATGAGCTATGGTAGAGGGCCAGATGATGATGAAAATGCACAGTATGGAAGAACACAGCCAGCAAATGGTGAGCTTCCTTTATCATCTCAAGGTTATGGAGATCAGATGTTATCTTCTTCACTGCACAAACGTGTGCATCCGTATCCAGTTTCTGAACCAGGGAGTGCAAGATGGGATGAAAAGAGAGAGGAAGGTTGGAAAGATAGAATGGATGACTGGAAATTGCAGCAAGGCAATCTTGGGCCTGAACCTGATGATGCCAATGACCCTGACATGGCTATGCTTGATGCAGCTAGACAGCCACTATCAAGGAAGGTACCAATAGCATCTAGCAAAATTAATCCTTACCGGATGGTCATTGTGGCTCGGCTCGTCATTCTCGCCTTCTTCCTTCGGTATCGGATTCTAAATCCAGTACATGACGCATTGGGTTTGTGGCTAACTTCTGTGATATGTGAAATCTGGTTTGCATTTTCATGGATCCTCGATCAGTTTCCCAAATGGTTCCCAATCGATCGTGAAACTTACTTGGATCGTCTATCCCTCAGGTATGAACGAGAGGGTGAACCTAATTTGCTTGCTCCAGTGGACATCTTTGTCAGTACTGTAGATCCATTGAAGGAACCTCCTCTTGTAACAGCCAACACAATCTTATCTATCTTGGCCATGGACTATCCAGTTGATAAGATTTCATGCTACGTTTCAGATGATGGAGCTTCCATGCTGACCTTTGAAGCAATGTCTGAAACTGCAGAATTTGCCAGGAAATGGGTGCCTTTTTGTAAGAAGTTTTCCATAGAACCACGAGCACCTGAAATGTACTTTTGTGAGAAGATTGATTATCTCAAGGATAAAGTCCAACCAACATTTGTAAAGGAGCGTCGAGCAATGAAGAGAGAATATGAAGAATTCAAGGTCAGGATAAATGCTCAAGTAGCAAAAGCCGTGAAAGTTCCCACAGAAGGATGGATAATGCAAGATGGAACGCCATGGCCAGGCAACAACACAAAAGATCATCCTGGTATGATCCAAGTCTTTCTGGGTCACAGTGGAGGCCTTGATGCAGAAGGGAATGAACTCCCCCGCTTAGTTTATGTATCTCGTGAGAAAAGACCAGGTTTCCAACATCACAAGAAAGCTGGTGCCATGAATGCCTTGATTCGTGTCTCTGCAGTGCTTACAAATGCTCCATTCATGTTGAACTTGGATTGTGATCACTACATAAACAATAGCAAAGCAGCACGAGAGGCCATGTGTTTCCTTATGGACCCTCAAGTCGGGAAGAAAGTCTGTTATGTACAATTTCCACAAAGATTTGATGGAATAGACAGGCATGATCGTTATGCCAACAGAAATACAGTCTTCTTTGATATTAACATGCGAGGTTTAGATGGAATTCAGGGTCCTGTATATGTCGGCACAGGGTGCGTCTTTAGGAGGCAGGCTTTATATGGTTATGAACCCCCAAAAGGTCCTAAGCGCCCAAGAATGGTAAGCTGCGACTGTTGTCCATGCTTTGGTCGTCGCAAGAAGCTTAAGAGCTCTAAAAGTGGGGTAGATGGAGATGCTGCAGTGATGGAGGATGACAAGGAGCTACTAATGTCACAAATGAATTTCGAAAAGAAATTTGGACAGTCATCAATTTTTGTTACCTCAACTTTGATGGAAGAAGGCGGTGTTCCACCCTCGTCAAGTCCAGCAGCCCTGCTTAAGGAAGCAATTCATGTTATCAGTTGTGGTTATGAAGACAAAACCGAATGGGGTACCGAGTTGGGCTGGATTTACGGATCTATCACAGAAGATATTCTAACAGGTTTCAAGATGCATTGTCGTGGCTGGAGATCTATATACTGCATGCCCAAGCGACCTGCATTTAAGGGTACAGCTCCCATTAACTTGTCTGATCGGCTGAACCAGGTACTTCGGTGGGCACTCGGGTCTATTGAAATCTTTTTCAGCAACCACTGCCCTGTTTGGTATGGTTACAAGGGTGGGAAGCTAAAGTGGCTCGAGAGATTTGCATATGTCAACACAACTGTCTACCCCTTCACTTCAATACCACTTCTCGCCTACTGTACCCTCCCTGCGATCTGCCTGCTCACCGATAAGTTCATCATGCCACCGATAAGCACTTTTGCAAGTCTCTTCTTCATTGCCTTGTTTCTTTCCATTTTTGCTACGGGCATTCTTGAGCTTAAATGGAGTGGAGTTAGCATTGAGGAATGGTGGAGAAATGAGCAGTTCTGGGTCATTGGTGGTATTTCAGCTCATCTATTTGCTGTTGTACAAGGTCTGTTGAAGGTTTTGGCTGGAATTGATACTAGCTTCACAGTTACATCCAAGGCAACAGATGACGAAGAGTTCGGAGAATTATATGCCTTCAAATGGACCACTCTGCTAATCCCTCCAACAACTATTTTGATCATCAACCTTGTTGGGGTTGTTGCAGGCATCTCAGATGCCATAAACAATGGCTATCAATCATGGGGGCCTCTATTTGGGAAGCTTTTCTTTGCCTTCTGGGTGATTGTCCATCTGTACCCATTCCTTAAGGGTCTTATGGGCCGACAAAACCGCACACCGACTATAGTTGTCATATGGTCCGTGCTGTTGGCTTCAATCTTCTCCTTGCTTTGGGTCCGAATTGATCCGTTTGTGATGAAAACAAAGGGACCTGATACCAAGCAATGTGGATTAAATTGCTGA 3099 44.6 MEASAGLVAGSHNRNELVVIHGHEEPKPLKNLDGQVCEICGDEVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQLCPQCKTRYKRLKGCPRVEGDDDEEDIDDIEHEFNIDDERNKHSHMAEAMLHGKMSYGRGPDDDENAQYGRTQPANGELPLSSQGYGDQMLSSSLHKRVHPYPVSEPGSARWDEKREEGWKDRMDDWKLQQGNLGPEPDDANDPDMAMLDAARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSVICEIWFAFSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNLLAPVDIFVSTVDPLKEPPLVTANTILSILAMDYPVDKISCYVSDDGASMLTFEAMSETAEFARKWVPFCKKFSIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINAQVAKAVKVPTEGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAAREAMCFLMDPQVGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPRMVSCDCCPCFGRRKKLKSSKSGVDGDAAVMEDDKELLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSNHCPVWYGYKGGKLKWLERFAYVNTTVYPFTSIPLLAYCTLPAICLLTDKFIMPPISTFASLFFIALFLSIFATGILELKWSGVSIEEWWRNEQFWVIGGISAHLFAVVQGLLKVLAGIDTSFTVTSKATDDEEFGELYAFKWTTLLIPPTTILIINLVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDTKQCGLNC 1032
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 67607605 67612685 - Tan0020150.1 Tan09g1580 763923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1580 1032 CDD mRING-HC-C4C4_CesA 35 85 - -
Tan09g1580 1032 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Tan09g1580 1032 MobiDBLite consensus disorder prediction 146 166 - -
Tan09g1580 1032 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 233 1001 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Tan09g1580 1032 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 438 618 IPR029044 -
Tan09g1580 1032 SUPERFAMILY Nucleotide-diphospho-sugar transferases 341 856 IPR029044 -
Tan09g1580 1032 FunFam Cellulose synthase 19 110 - -
Tan09g1580 1032 Pfam Zinc-binding RING-finger 27 103 IPR027934 -
Tan09g1580 1032 MobiDBLite consensus disorder prediction 133 166 - -
Tan09g1580 1032 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Tan09g1580 1032 Pfam Cellulose synthase 327 1026 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Tan09g1580 1032 SUPERFAMILY RING/U-box 21 107 - -
Tan09g1580 1032 FunFam Cellulose synthase 444 618 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3204 Tan-Chr1:86085629 Tan09g1580 Tan-Chr9:67607605 8.60E-107 dispersed
Tan01g3205 Tan-Chr1:86085629 Tan09g1580 Tan-Chr9:67607605 2.70E-93 dispersed
Tan05g0896 Tan-Chr5:7268165 Tan09g1580 Tan-Chr9:67607605 3.10E-120 dispersed
Tan05g0897 Tan-Chr5:7293057 Tan09g1580 Tan-Chr9:67607605 8.90E-112 dispersed
Tan06g0578 Tan-Chr6:4432734 Tan09g1580 Tan-Chr9:67607605 0.00E+00 dispersed
Tan06g1408 Tan-Chr6:18243052 Tan09g1580 Tan-Chr9:67607605 0.00E+00 dispersed
Tan09g1580 Tan-Chr9:67607605 Tan10g1797 Tan-Chr10:55052167 0.00E+00 dispersed
Tan09g1580 Tan-Chr9:67607605 Tan05g0894 Tan-Chr5:7188981 4.60E-114 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1580 K10999 - csv:101214842 2055.8