Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1597 ATGGCGAAATCATCCACGTCGCAACAACAACTTCAGATTAGGGACTCGAACAACAATGTAAATAAAAATAATGTGGTAATGAAGACCAAAACAAAGCGAACTCGGAGGAGCGTGCCGAGAGATTCTCCTCCTCAGCGAAGCTCCATTTACCGCGGCGTTACTAGGCATCGATGGACGGGGAGATATGAGGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCGCAGAACAAGAAAGGAAGACAAGTTTATCTAGGTGCATACGACGACGAGGAAGCAGCAGCCCATGCTTACGACCTTGCAGCATTGAAGTACTGGGGTCAAGAAACCATTCTTAATTTCCCGCTAATGACGTATCAAAAAGAGCTGAAGGAAATGGAGGGCCAATCGAGAGAAGAATACATTGGGTCGTTGAGAAGAAAAAGCAGTGGGTTTTCTCGTGGGGTTTCGAAATACAGAGGCGTTGCAAGACACCATCATAATGGTAGATGGGAAGCTCGAATTGGCAGGGTGTTCGGCAACAAATATCTCTATCTCGGAACATATGCAACGCAAGAAGAAGCAGCCACGGCGTACGATATCGCAGCCATAGAATACCGTGGACTCAACGCCGTTACAAATTTCGACCTAAGCCGTTATATCAAGTGGTTAAAACCAAGCAACGACGTCGTTTACGATAACAACCACCTCTTAAACGTCGATTCGATCCTCCCAAGCCCTAAACAAGAACTCGACCTAGATCTATTCGCGTCGGACCAAAACCAAACCAACACCGATTCGGCGATGGCGGAACCGATTGCCTTACCTCCGTCGCACCGATCGACCGCCTCCACATCGGCTCTCGGCCTCTTGCTCCAATCTTCTAAGTTCAAGGAAATGATGGAGATGAATTCGACGACGGAGTGTCCGTCGACGCCGTCGTCGTCGGAGCAGACCGAACGGCGACGGTGTTTGTTTCCCGATGATGTTCAGACTTTCTTTGCATGCGATGGCTCGGGATCTTATTGCTATGGAGAAGCTGATGATGCAATTTTTAGTGACTTCAATTCTTTTGTGCCGCCGCCGTTGTCGCATTACGATTTTGACGAATAG 1092 47.99 MAKSSTSQQQLQIRDSNNNVNKNNVVMKTKTKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGQETILNFPLMTYQKELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDIAAIEYRGLNAVTNFDLSRYIKWLKPSNDVVYDNNHLLNVDSILPSPKQELDLDLFASDQNQTNTDSAMAEPIALPPSHRSTASTSALGLLLQSSKFKEMMEMNSTTECPSTPSSSEQTERRRCLFPDDVQTFFACDGSGSYCYGEADDAIFSDFNSFVPPPLSHYDFDE 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 67738656 67742131 + Tan0008718.1 Tan09g1597 763940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1597 363 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 32 251 - -
Tan09g1597 363 ProSiteProfiles AP2/ERF domain profile. 151 209 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1597 363 FunFam AP2-like ethylene-responsive transcription factor 150 211 - -
Tan09g1597 363 Pfam AP2 domain 150 201 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1597 363 Pfam AP2 domain 50 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1597 363 CDD AP2 150 211 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1597 363 MobiDBLite consensus disorder prediction 1 48 - -
Tan09g1597 363 ProSiteProfiles AP2/ERF domain profile. 49 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1597 363 FunFam AP2-like ethylene-responsive transcription factor 48 117 - -
Tan09g1597 363 Gene3D AP2/ERF domain 49 117 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1597 363 Gene3D AP2/ERF domain 150 211 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1597 363 PRINTS Ethylene responsive element binding protein signature 191 211 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1597 363 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1597 363 SMART rav1_2 49 121 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1597 363 SMART rav1_2 151 215 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1597 363 SUPERFAMILY DNA-binding domain 48 116 IPR016177 GO:0003677(InterPro)
Tan09g1597 363 MobiDBLite consensus disorder prediction 1 27 - -
Tan09g1597 363 SUPERFAMILY DNA-binding domain 150 211 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0745 Tan-Chr4:6442026 Tan09g1597 Tan-Chr9:67738656 1.00E-77 dispersed
Tan06g0485 Tan-Chr6:3599677 Tan09g1597 Tan-Chr9:67738656 1.50E-117 dispersed
Tan07g1256 Tan-Chr7:56439284 Tan09g1597 Tan-Chr9:67738656 1.10E-78 dispersed
Tan08g1184 Tan-Chr8:28966042 Tan09g1597 Tan-Chr9:67738656 1.90E-68 dispersed
Tan08g1929 Tan-Chr8:71547037 Tan09g1597 Tan-Chr9:67738656 1.00E-42 dispersed
Tan08g1930 Tan-Chr8:71547037 Tan09g1597 Tan-Chr9:67738656 7.90E-43 dispersed
Tan09g1597 Tan-Chr9:67738656 Tan09g1693 Tan-Chr9:68529824 9.80E-72 dispersed
Tan09g1597 Tan-Chr9:67738656 Tan03g1701 Tan-Chr3:72988612 6.40E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28362 PF00847 AP2 7.30E-13 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1597 K09285 - csv:101219103 610.912