Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1600 ATGCTCTTCTTCTTTTTCTTTCTTCTGCATTTCTTCCCAGCTATGGTTCCTAAACTCTTCTCTTTGATCATTCTTTCTTCTGCTTTCCTATGCCTTTCCTATGAACCTCGAAATCCTGAAGTGGAAGCTCTGATTAATGTGAAGACGGCATTGAATGATCCGCACGGCGTACTCAGCAATTGGGATGAAGACTCTGTGGACCCTTGCAGTTGGGCAATGATCACCTGCTCCCCTGAGAACCTCGTTATAGGACTAGGAGCTCCGAGCCAGTCTCTTTCCGGAAGCTTGTCTGGGGCGATTGGGAACCTCACAAATCTTCGCCAAGTGCTGCTGCAGAACAACAACATTTCTGGTCCGATTCCCATTGAACTTGGAACTCTCACTATGCTTCAAACATTAGATCTCTCAAACAATCGGTTCTCTGGCCCTATACCCGTATCCTTTGGTCAGCTGAACGGTCTACGCTACCTGAGGGTGAACAATAATAGCTTGTCCGGGCCTTTTCCCTTGTCTTTGGCCAGAATCCCCCAGCTTGCTTTCTTGGACTTGTCCTTTAACAATCTCAGTGGACCAGTGCCTGTGTTTCCAGCTAGAACATTCAATGTGGTGGGAAATCCGATGATTTGTGGAAGTAATCCTAGTGAAGGTTGCTCTGGCTCAGCCAATGCCGTTCCTTTATCTTTCTCTCTAGAATCATCCCCTGGAAGACTCAGGTACAAAAGAATAGCAGTGGCACTTGGGGTCAGCCTCAGCTGTGGTTTTCTGATAATCCTAGCACTTGGAATTCTGTGGCGCAGAAAAAATCACAAGACCAAAACCATCCTAGACATCAATGTAGGCAATCAAGAAGTTGGACTTGTGCGCTTAGGGAACCTGAGAAACTTCAGTTTCAAAGAGCTCCAGTTAGCAACAGACCATTTTAGTTCCAAACATATACTTGGGGCTGGAGGATTTGGTAATGTGTACAAGGGAAAGCTAGGAGATGGGACTATGGTGGCAGTGAAACGGCTAAAAGATGTAACGGGTACCACTGGAGAGTCCCAGTTCCGCACAGAGTTGGAGATGATTAGCCTTGCAGTTCATCGCAATTTGCTTCGGTTAATTGGTTATTGCGCCACTTCTCACGAGAGGCTATTGGTGTATCCTTACATGTCAAATGGCAGTGTAGCTTCCAGGCTCAGAGGAAAACCAGCCTTGGACTGGAACACGAGGAAGAGAATAGCAATTGGAGCTGCAAGGGGTCTGCTCTACCTCCATGAGCAATGTGATCCCAAGATAATCCATAGAGACGTGAAGGCTGCCAATGTGCTTCTAGATGACTTCTGCGAAGCTGTAGTTGGTGATTTTGGACTTGCAAAGCTTCTTGACCATGCTGACTCTCATGTGACCACTGCAGTTCGTGGCACTGTCGGGCACATCGCTCCGGAGTATCTTTCGACTGGCCAATCCTCTGAGAAGACTGATGTGTTTGGGTTTGGCATTCTTTTGATAGAGCTAATAACTGGGATGAGAGCTCTTGAATTTGGGAAAACAATCAATCAAAAAGGCGCCATGCTTGAGTGGGTGAAAAAGATACAACAGGAAAAGAAAGTGGAATTGCTTGTGGACAGAGAGCTAGGGAACAACTATGATCAGATTGAAGTTGGGGAAATGTTGCAAGTGGCTCTTCTTTGCACTCAGTATTTACCTGCTCACCGTCCCAAGATGTCGGAGGTGGTCCGAATGCTTGAAGGGGATGGCCTTGTTGAGAAATGGGCTGCATCCCACACTCATAATGACTTAAATGTCACCCTCTTTCATTCACGAAACAGCTGCAAAAGTACATACAACCCCACAAATGCATTCAAGAATAATGGCAATGATCGTGAACATTCAAGCATGTTAAGTTTCACAATGGACGACGATGACGACGAGCGATCTCTAGACTCCTATGCCATGGAACTCTCCGGTCCAAGGTAG 1959 46.45 MLFFFFFLLHFFPAMVPKLFSLIILSSAFLCLSYEPRNPEVEALINVKTALNDPHGVLSNWDEDSVDPCSWAMITCSPENLVIGLGAPSQSLSGSLSGAIGNLTNLRQVLLQNNNISGPIPIELGTLTMLQTLDLSNNRFSGPIPVSFGQLNGLRYLRVNNNSLSGPFPLSLARIPQLAFLDLSFNNLSGPVPVFPARTFNVVGNPMICGSNPSEGCSGSANAVPLSFSLESSPGRLRYKRIAVALGVSLSCGFLIILALGILWRRKNHKTKTILDINVGNQEVGLVRLGNLRNFSFKELQLATDHFSSKHILGAGGFGNVYKGKLGDGTMVAVKRLKDVTGTTGESQFRTELEMISLAVHRNLLRLIGYCATSHERLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDFCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLIELITGMRALEFGKTINQKGAMLEWVKKIQQEKKVELLVDRELGNNYDQIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLVEKWAASHTHNDLNVTLFHSRNSCKSTYNPTNAFKNNGNDREHSSMLSFTMDDDDDERSLDSYAMELSGPR 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 67794965 67800148 + Tan0004405.1 Tan09g1600 763943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1600 652 FunFam Somatic embryogenesis receptor-like kinase 1 384 596 - -
Tan09g1600 652 Gene3D Phosphorylase Kinase; domain 1 277 383 - -
Tan09g1600 652 SUPERFAMILY Protein kinase-like (PK-like) 287 577 IPR011009 -
Tan09g1600 652 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524(InterPro)
Tan09g1600 652 Pfam Leucine rich repeat N-terminal domain 38 77 IPR013210 -
Tan09g1600 652 CDD TM_EGFR-like 242 272 - -
Tan09g1600 652 Pfam Leucine rich repeat 130 188 IPR001611 GO:0005515(InterPro)
Tan09g1600 652 Gene3D Ribonuclease Inhibitor 37 219 IPR032675 -
Tan09g1600 652 Pfam Protein tyrosine and serine/threonine kinase 310 576 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan09g1600 652 SUPERFAMILY L domain-like 38 202 - -
Tan09g1600 652 Pfam Leucine Rich Repeat 105 127 IPR001611 GO:0005515(InterPro)
Tan09g1600 652 MobiDBLite consensus disorder prediction 612 626 - -
Tan09g1600 652 Gene3D Transferase(Phosphotransferase) domain 1 384 595 - -
Tan09g1600 652 MobiDBLite consensus disorder prediction 612 652 - -
Tan09g1600 652 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 20 652 - -
Tan09g1600 652 FunFam Putative LRR receptor-like serine/threonine-protein kinase 37 219 - -
Tan09g1600 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan09g1600 652 SMART serkin_6 307 576 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan09g1600 652 ProSiteProfiles Protein kinase domain profile. 307 582 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan09g1600 652 FunFam Somatic embryogenesis receptor kinase 1 276 383 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g1600 Tan-Chr9:67794965 Tan09g1602 Tan-Chr9:67794965 5.90E-301 dispersed
Tan09g1600 Tan-Chr9:67794965 Tan09g1601 Tan-Chr9:67794965 4.60E-245 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68069 PF07714 PK_Tyr_Ser-Thr 2.90E-42 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1600 - - - 0.0