Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1602 ATGCCTGTCCGTTTGGCTTATTCCTATTGTGCAGTGGAAGCTCTGATTAATGTGAAGACGGCATTGAATGATCCGCACGGCGTACTCAGCAATTGGGATGAAGACTCTGTGGACCCTTGCAGTTGGGCAATGATCACCTGCTCCCCTGAGAACCTCGTTATAGGACTAGGAGCTCCGAGCCAGTCTCTTTCCGGAAGCTTGTCTGGGGCGATTGGGAACCTCACAAATCTTCGCCAAGTGCTGCTGCAGAACAACAACATTTCTGGTCCGATTCCCATTGAACTTGGAACTCTCACTATGCTTCAAACATTAGATCTCTCAAACAATCGGTTCTCTGGCCCTATACCCGTATCCTTTGGTCAGCTGAACGGTCTACGCTACCTGAGGGTGAACAATAATAGCTTGTCCGGGCCTTTTCCCTTGTCTTTGGCCAGAATCCCCCAGCTTGCTTTCTTGGACTTGTCCTTTAACAATCTCAGTGGACCAGTGCCTGTGTTTCCAGCTAGAACATTCAATGTGGTGGGAAATCCGATGATTTGTGGAAGTAATCCTAGTGAAGGTTGCTCTGGCTCAGCCAATGCCGTTCCTTTATCTTTCTCTCTAGAATCATCCCCTGGAAGACTCAGGTACAAAAGAATAGCAGTGGCACTTGGGGTCAGCCTCAGCTGTGGTTTTCTGATAATCCTAGCACTTGGAATTCTGTGGCGCAGAAAAAATCACAAGACCAAAACCATCCTAGACATCAATGTAGGCAATCAAGAAGTTGGACTTGTGCGCTTAGGGAACCTGAGAAACTTCAGTTTCAAAGAGCTCCAGTTAGCAACAGACCATTTTAGTTCCAAACATATACTTGGGGCTGGAGGATTTGGTAATGTGTACAAGGGAAAGCTAGGAGATGGGACTATGGTGGCAGTGAAACGGCTAAAAGATGTAACGGGTACCACTGGAGAGTCCCAGTTCCGCACAGAGTTGGAGATGATTAGCCTTGCAGTTCATCGCAATTTGCTTCGGTTAATTGGTTATTGCGCCACTTCTCACGAGAGGCTATTGGTGTATCCTTACATGTCAAATGGCAGTGTAGCTTCCAGGCTCAGAGGAAAACCAGCCTTGGACTGGAACACGAGGAAGAGAATAGCAATTGGAGCTGCAAGGGGTCTGCTCTACCTCCATGAGCAATGTGATCCCAAGATAATCCATAGAGACGTGAAGGCTGCCAATGTGCTTCTAGATGACTTCTGCGAAGCTGTAGTTGGTGATTTTGGACTTGCAAAGCTTCTTGACCATGCTGACTCTCATGTGACCACTGCAGTTCGTGGCACTGTCGGGCACATCGCTCCGGAGTATCTTTCGACTGGCCAATCCTCTGAGAAGACTGATGTGTTTGGGTTTGGCATTCTTTTGATAGAGCTAATAACTGGGATGAGAGCTCTTGAATTTGGGAAAACAATCAATCAAAAAGGCGCCATGCTTGAGTGGGTGAAAAAGATACAACAGGAAAAGAAAGTGGAATTGCTTGTGGACAGAGAGCTAGGGAACAACTATGATCAGATTGAAGTTGGGGAAATGTTGCAAGTGGCTCTTCTTTGCACTCAGTATTTACCTGCTCACCGTCCCAAGATGTCGGAGGTGGTCCGAATGCTTGAAGGGGATGGCCTTGTTGAGAAATGGGCTGCATCCCACACTCATAATGACTTAAATGTCACCCTCTTTCATTCACGAAACAGCTGCAAAAGTACATACAACCCCACAAATGCATTCAAGAATAATGGCAATGATCGTGAACATTCAAGCATGTTAAGTTTCACAATGGACGACGATGACGACGAGCGATCTCTAGACTCCTATGCCATGGAACTCTCCGGTCCAAGGTAG 1872 46.96 MPVRLAYSYCAVEALINVKTALNDPHGVLSNWDEDSVDPCSWAMITCSPENLVIGLGAPSQSLSGSLSGAIGNLTNLRQVLLQNNNISGPIPIELGTLTMLQTLDLSNNRFSGPIPVSFGQLNGLRYLRVNNNSLSGPFPLSLARIPQLAFLDLSFNNLSGPVPVFPARTFNVVGNPMICGSNPSEGCSGSANAVPLSFSLESSPGRLRYKRIAVALGVSLSCGFLIILALGILWRRKNHKTKTILDINVGNQEVGLVRLGNLRNFSFKELQLATDHFSSKHILGAGGFGNVYKGKLGDGTMVAVKRLKDVTGTTGESQFRTELEMISLAVHRNLLRLIGYCATSHERLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDFCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLIELITGMRALEFGKTINQKGAMLEWVKKIQQEKKVELLVDRELGNNYDQIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLVEKWAASHTHNDLNVTLFHSRNSCKSTYNPTNAFKNNGNDREHSSMLSFTMDDDDDERSLDSYAMELSGPR 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 67794965 67800148 + Tan0004405.3 Tan09g1602 763945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1602 623 SMART serkin_6 278 547 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan09g1602 623 FunFam Putative LRR receptor-like serine/threonine-protein kinase 9 190 - -
Tan09g1602 623 Pfam Leucine rich repeat N-terminal domain 12 48 IPR013210 -
Tan09g1602 623 MobiDBLite consensus disorder prediction 583 597 - -
Tan09g1602 623 FunFam Somatic embryogenesis receptor kinase 1 247 354 - -
Tan09g1602 623 SUPERFAMILY L domain-like 12 173 - -
Tan09g1602 623 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 623 - -
Tan09g1602 623 ProSitePatterns Protein kinases ATP-binding region signature. 284 306 IPR017441 GO:0005524(InterPro)
Tan09g1602 623 Pfam Protein tyrosine and serine/threonine kinase 281 547 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan09g1602 623 SUPERFAMILY Protein kinase-like (PK-like) 258 548 IPR011009 -
Tan09g1602 623 FunFam Somatic embryogenesis receptor-like kinase 1 355 567 - -
Tan09g1602 623 Gene3D Phosphorylase Kinase; domain 1 248 354 - -
Tan09g1602 623 MobiDBLite consensus disorder prediction 583 623 - -
Tan09g1602 623 Pfam Leucine Rich Repeat 76 98 IPR001611 GO:0005515(InterPro)
Tan09g1602 623 Gene3D Ribonuclease Inhibitor 11 190 IPR032675 -
Tan09g1602 623 Gene3D Transferase(Phosphotransferase) domain 1 355 566 - -
Tan09g1602 623 ProSiteProfiles Protein kinase domain profile. 278 553 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan09g1602 623 Pfam Leucine rich repeat 101 159 IPR001611 GO:0005515(InterPro)
Tan09g1602 623 CDD TM_EGFR-like 213 243 - -
Tan09g1602 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 397 409 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g1600 Tan-Chr9:67794965 Tan09g1602 Tan-Chr9:67794965 5.90E-301 dispersed
Tan09g1602 Tan-Chr9:67794965 Tan09g1605 Tan-Chr9:67795895 2.50E-264 dispersed
Tan09g1601 Tan-Chr9:67794965 Tan09g1602 Tan-Chr9:67794965 1.40E-223 tandem
Tan09g1602 Tan-Chr9:67794965 Tan09g1603 Tan-Chr9:67794965 2.50E-264 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68071 PF07714 PK_Tyr_Ser-Thr 2.70E-42 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1602 - - - 0.0