Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1603 ATGCTTCAAACATTAGATCTCTCAAACAATCGGTTCTCTGGCCCTATACCCGTATCCTTTGGTCAGCTGAACGGTCTACGCTACCTGAGGGTGAACAATAATAGCTTGTCCGGGCCTTTTCCCTTGTCTTTGGCCAGAATCCCCCAGCTTGCTTTCTTGGACTTGTCCTTTAACAATCTCAGTGGACCAGTGCCTGTGTTTCCAGCTAGAACATTCAATGTGGTGGGAAATCCGATGATTTGTGGAAGTAATCCTAGTGAAGGTTGCTCTGGCTCAGCCAATGCCGTTCCTTTATCTTTCTCTCTAGAATCATCCCCTGGAAGACTCAGGTACAAAAGAATAGCAGTGGCACTTGGGGTCAGCCTCAGCTGTGGTTTTCTGATAATCCTAGCACTTGGAATTCTGTGGCGCAGAAAAAATCACAAGACCAAAACCATCCTAGACATCAATGTAGGCAATCAAGAAGTTGGACTTGTGCGCTTAGGGAACCTGAGAAACTTCAGTTTCAAAGAGCTCCAGTTAGCAACAGACCATTTTAGTTCCAAACATATACTTGGGGCTGGAGGATTTGGTAATGTGTACAAGGGAAAGCTAGGAGATGGGACTATGGTGGCAGTGAAACGGCTAAAAGATGTAACGGGTACCACTGGAGAGTCCCAGTTCCGCACAGAGTTGGAGATGATTAGCCTTGCAGTTCATCGCAATTTGCTTCGGTTAATTGGTTATTGCGCCACTTCTCACGAGAGGCTATTGGTGTATCCTTACATGTCAAATGGCAGTGTAGCTTCCAGGCTCAGAGGAAAACCAGCCTTGGACTGGAACACGAGGAAGAGAATAGCAATTGGAGCTGCAAGGGGTCTGCTCTACCTCCATGAGCAATGTGATCCCAAGATAATCCATAGAGACGTGAAGGCTGCCAATGTGCTTCTAGATGACTTCTGCGAAGCTGTAGTTGGTGATTTTGGACTTGCAAAGCTTCTTGACCATGCTGACTCTCATGTGACCACTGCAGTTCGTGGCACTGTCGGGCACATCGCTCCGGAGTATCTTTCGACTGGCCAATCCTCTGAGAAGACTGATGTGTTTGGGTTTGGCATTCTTTTGATAGAGCTAATAACTGGGATGAGAGCTCTTGAATTTGGGAAAACAATCAATCAAAAAGGCGCCATGCTTGAGTGGGTGAAAAAGATACAACAGGAAAAGAAAGTGGAATTGCTTGTGGACAGAGAGCTAGGGAACAACTATGATCAGATTGAAGTTGGGGAAATGTTGCAAGTGGCTCTTCTTTGCACTCAGTATTTACCTGCTCACCGTCCCAAGATGTCGGAGGTGGTCCGAATGCTTGAAGGGGATGGCCTTGTTGAGAAATGGGCTGCATCCCACACTCATAATGACTTAAATGTCACCCTCTTTCATTCACGAAACAGCTGCAAAAGTACATACAACCCCACAAATGCATTCAAGAATAATGGCAATGATCGTGAACATTCAAGCATGTTAAGTTTCACAATGGACGACGATGACGACGAGCGATCTCTAGACTCCTATGCCATGGAACTCTCCGGTCCAAGGTAG 1575 46.29 MLQTLDLSNNRFSGPIPVSFGQLNGLRYLRVNNNSLSGPFPLSLARIPQLAFLDLSFNNLSGPVPVFPARTFNVVGNPMICGSNPSEGCSGSANAVPLSFSLESSPGRLRYKRIAVALGVSLSCGFLIILALGILWRRKNHKTKTILDINVGNQEVGLVRLGNLRNFSFKELQLATDHFSSKHILGAGGFGNVYKGKLGDGTMVAVKRLKDVTGTTGESQFRTELEMISLAVHRNLLRLIGYCATSHERLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDFCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLIELITGMRALEFGKTINQKGAMLEWVKKIQQEKKVELLVDRELGNNYDQIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLVEKWAASHTHNDLNVTLFHSRNSCKSTYNPTNAFKNNGNDREHSSMLSFTMDDDDDERSLDSYAMELSGPR 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 67794965 67800148 + Tan0004405.5 Tan09g1603 763946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1603 524 CDD TM_EGFR-like 114 144 - -
Tan09g1603 524 FunFam Somatic embryogenesis receptor-like kinase 1 256 468 - -
Tan09g1603 524 Pfam Leucine rich repeat 2 60 IPR001611 GO:0005515(InterPro)
Tan09g1603 524 Pfam Protein tyrosine and serine/threonine kinase 182 448 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan09g1603 524 SMART serkin_6 179 448 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan09g1603 524 Gene3D Phosphorylase Kinase; domain 1 149 255 - -
Tan09g1603 524 FunFam Somatic embryogenesis receptor kinase 1 148 255 - -
Tan09g1603 524 MobiDBLite consensus disorder prediction 484 498 - -
Tan09g1603 524 ProSitePatterns Protein kinases ATP-binding region signature. 185 207 IPR017441 GO:0005524(InterPro)
Tan09g1603 524 SUPERFAMILY L domain-like 2 74 - -
Tan09g1603 524 Gene3D Transferase(Phosphotransferase) domain 1 256 467 - -
Tan09g1603 524 MobiDBLite consensus disorder prediction 484 524 - -
Tan09g1603 524 SUPERFAMILY Protein kinase-like (PK-like) 159 449 IPR011009 -
Tan09g1603 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 298 310 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan09g1603 524 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 2 524 - -
Tan09g1603 524 ProSiteProfiles Protein kinase domain profile. 179 454 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan09g1603 524 Gene3D Ribonuclease Inhibitor 1 91 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g1603 Tan-Chr9:67794965 Tan09g1605 Tan-Chr9:67795895 1.10E-278 dispersed
Tan09g1602 Tan-Chr9:67794965 Tan09g1603 Tan-Chr9:67794965 2.50E-264 tandem
Tan09g1603 Tan-Chr9:67794965 Tan09g1604 Tan-Chr9:67794965 3.50E-187 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68072 PF07714 PK_Tyr_Ser-Thr 1.70E-42 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1603 - - - 0.0