Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1604 ATGCCTGTCCGTTTGGCTTATTCCTATTGTGCAGTGGAAGCTCTGATTAATGTGAAGACGGCATTGAATGATCCGCACGGCGTACTCAGCAATTGGGATGAAGACTCTGTGGACCCTTGCAGTTGGGCAATGATCACCTGCTCCCCTGAGAACCTCGTTATAGGACTAGGAGCTCCGAGCCAGTCTCTTTCCGGAAGCTTGTCTGGGGCGATTGGGAACCTCACAAATCTTCGCCAAGTGCTGCTGCAGAACAACAACATTTCTGGTCCGATTCCCATTGAACTTGGAACTCTCACTATGCTTCAAACATTAGATCTCTCAAACAATCGGTTCTCTGGCCCTATACCCGTATCCTTTGGTCAGCTGAACGGTCTACGCTACCTGAGGGTGAACAATAATAGCTTGTCCGGGCCTTTTCCCTTGTCTTTGGCCAGAATCCCCCAGCTTGCTTTCTTGGACTTGTCCTTTAACAATCTCAGTGGACCAGTGCCTGTGTTTCCAGCTAGAACATTCAATGTGGTGGGAAATCCGATGATTTGTGGAAGTAATCCTAGTGAAGGTTGCTCTGGCTCAGCCAATGCCGTTCCTTTATCTTTCTCTCTAGAATCATCCCCTGGAAGACTCAGGTACAAAAGAATAGCAGTGGCACTTGGGGTCAGCCTCAGCTGTGGTTTTCTGATAATCCTAGCACTTGGAATTCTGTGGCGCAGAAAAAATCACAAGACCAAAACCATCCTAGACATCAATGTAGGCAATCAAGAAGTTGGACTTGTGCGCTTAGGGAACCTGAGAAACTTCAGTTTCAAAGAGCTCCAGTTAGCAACAGACCATTTTAGTTCCAAACATATACTTGGGGCTGGAGGATTTGGTAATGTGTACAAGGGAAAGCTAGGAGATGGGACTATGGTGGCAGTGAAACGGCTAAAAGATGTAACGGGTACCACTGGAGAGTCCCAGTTCCGCACAGAGTTGGAGATGATTAGCCTTGCAGTTCATCGCAATTTGCTTCGGTTAATTGGTTATTGCGCCACTTCTCACGAGAGGCTATTGGTGTATCCTTACATGTCAAATGGCAGTGTAGCTTCCAGGCTCAGAGGAAAACCAGCCTTGGACTGGAACACGAGGAAGAGAATAGCAATTGGAGCTGCAAGGGGTCTGCTCTACCTCCATGAGCAATGTGATCCCAAGATAATCCATAGAGACGTGAAGGCTGCCAATGTGCTTCTAGATGACTTCTGCGAAGCTGTAGTTGGTGATTTTGGACTTGCAAAGCTTCTTGACCATGCTGACTCTCATGTGACCACTGCAGTTCGTGGCACTGTCGGGCACATCGCTCCGGAGTATCTTTCGACTGGCCAATCCTCTGAGAAGACTGATGTGTTTGGGTTTGGCATTCTTTTGATAGAGCTAATAACTGGGATGAGAGCTCTTGAATTTGGGAAAACAATCAATCAAAAAGGCGCCATGCTTGAGTGGGTAAGTCTTAACTATAATCTAAAAGCTATCTTAGCTAATTTGACTTTATCAATGATTGAAGCTAACATCTATGGTTGCTGCTTTTGA 1563 46.51 MPVRLAYSYCAVEALINVKTALNDPHGVLSNWDEDSVDPCSWAMITCSPENLVIGLGAPSQSLSGSLSGAIGNLTNLRQVLLQNNNISGPIPIELGTLTMLQTLDLSNNRFSGPIPVSFGQLNGLRYLRVNNNSLSGPFPLSLARIPQLAFLDLSFNNLSGPVPVFPARTFNVVGNPMICGSNPSEGCSGSANAVPLSFSLESSPGRLRYKRIAVALGVSLSCGFLIILALGILWRRKNHKTKTILDINVGNQEVGLVRLGNLRNFSFKELQLATDHFSSKHILGAGGFGNVYKGKLGDGTMVAVKRLKDVTGTTGESQFRTELEMISLAVHRNLLRLIGYCATSHERLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDFCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLIELITGMRALEFGKTINQKGAMLEWVSLNYNLKAILANLTLSMIEANIYGCCF 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 67794965 67800148 + Tan0004405.6 Tan09g1604 763947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1604 520 Gene3D Transferase(Phosphotransferase) domain 1 355 514 - -
Tan09g1604 520 Pfam Protein kinase domain 279 478 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan09g1604 520 ProSiteProfiles Protein kinase domain profile. 278 520 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan09g1604 520 Pfam Leucine Rich Repeat 76 98 IPR001611 GO:0005515(InterPro)
Tan09g1604 520 ProSitePatterns Protein kinases ATP-binding region signature. 284 306 IPR017441 GO:0005524(InterPro)
Tan09g1604 520 Gene3D Phosphorylase Kinase; domain 1 248 354 - -
Tan09g1604 520 SUPERFAMILY L domain-like 12 173 - -
Tan09g1604 520 FunFam Somatic embryogenesis receptor kinase 1 247 354 - -
Tan09g1604 520 Gene3D Ribonuclease Inhibitor 11 190 IPR032675 -
Tan09g1604 520 Pfam Leucine rich repeat 101 159 IPR001611 GO:0005515(InterPro)
Tan09g1604 520 Pfam Leucine rich repeat N-terminal domain 12 48 IPR013210 -
Tan09g1604 520 FunFam Putative LRR receptor-like serine/threonine-protein kinase 9 190 - -
Tan09g1604 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 397 409 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan09g1604 520 SUPERFAMILY Protein kinase-like (PK-like) 258 484 IPR011009 -
Tan09g1604 520 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 494 - -
Tan09g1604 520 FunFam Somatic embryogenesis receptor-like kinase 1 355 511 - -
Tan09g1604 520 SMART serkin_6 278 520 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g1601 Tan-Chr9:67794965 Tan09g1604 Tan-Chr9:67794965 4.10E-239 dispersed
Tan09g1604 Tan-Chr9:67794965 Tan09g1606 Tan-Chr9:67795895 5.90E-187 dispersed
Tan09g1603 Tan-Chr9:67794965 Tan09g1604 Tan-Chr9:67794965 3.50E-187 tandem
Tan09g1604 Tan-Chr9:67794965 Tan09g1605 Tan-Chr9:67795895 5.90E-187 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68073 PF00069 Pkinase 1.30E-40 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1604 - - - 0.0