Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1648 ATGGGAATTGAGGGTGAAACTGTTGTAAAGGGTTTCGGTGGTGGATGGGGCGTGGTCGCTAAACCATGCGACTCTTGCAAGACTGCGCCTGCGGCTGTCTACTGTCGACCGGACTCGGCTTTTCTCTGCCTCAACTGCGACACCAAAATTCACGCCGCTAATAAGCTCGCTTCTCGCCACGACCGCGTCTGGATGTGCGAGGTCTGTGAACAAGCTCCCGCTGTCGTCATGTGCAAGGCCGATGCTGCGGCTCTCTGTGTCACCTGCGACGCCGATATTCACTCCGCTAACCCACTCGCCCGTCGCCACGAGCGTGTCCCGGTCGAGCCTTTTTACGACTCCGCCGACTCCGTGGTCAAACCCTCCTCGGTTTTCAATTTTCTCGTGCCCACTGAAACCAACGCCAGTGGCTGCGATGTCGGCCACCACCATGAGGAGGTGGAAGTTGCCTCTTGGCTTTTATCCAACCCGCCTTTCAACTCTAAGCTCGTTGACGGCCCTGAAATCAAGCCCTCTGGTGATCATATGTTCTTCACTGAAATGGATTCTTTTATTGATTTTGATTACCCAAATCCAGTCGCACTTAACGACAGCGTCGTCCCCGTTCAGACGAAGCCGCTCTCTGCGCCGGTGATCAACCATACCCACTCCCCTGACATCGATTTTTGCAGATCTAAGCTCAATTCATTCGGCTATCAACCTCAATCCCTCAGCCACAGTGTTTCCTCTTCTTCCCTAGAAGTCGGAGTTGTTCCAGAAGGGAATTCGATGTCCGAGATATCGTACCCGTTGGGACAACCAATGAGTAGCGGTACGGATTCGGGTTTACCGATGTCGGGATCAGGAAACCAAGCGACTCAATTGTGTGGAATCGATCGGGAGGCGAGAGTTTTAAGGTACAGAGAGAAGAGGAAGAACAGAAAGTTTGAGAAGACAATCCGGTACGCTTCGAGAAAAGCTTATGCGGAAACCCGACCCAGAATCAAAGGCCGGTTCGCCAAACGGACTGATATGCTATCAGAGATTGATGAAATCTATGGGCCGGCTGCTTCGTCTGAGTTCTTGGCCGACTTCCAGTACGGCGTCGTACCAACGTTTTGA 1101 52.77 MGIEGETVVKGFGGGWGVVAKPCDSCKTAPAAVYCRPDSAFLCLNCDTKIHAANKLASRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPFYDSADSVVKPSSVFNFLVPTETNASGCDVGHHHEEVEVASWLLSNPPFNSKLVDGPEIKPSGDHMFFTEMDSFIDFDYPNPVALNDSVVPVQTKPLSAPVINHTHSPDIDFCRSKLNSFGYQPQSLSHSVSSSSLEVGVVPEGNSMSEISYPLGQPMSSGTDSGLPMSGSGNQATQLCGIDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDMLSEIDEIYGPAASSEFLADFQYGVVPTF 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 68139619 68141952 - Tan0020937.1 Tan09g1648 763991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1648 366 ProSiteProfiles Zinc finger B-box type profile. 23 65 IPR000315 GO:0008270(InterPro)
Tan09g1648 366 CDD Bbox1_BBX-like 66 108 IPR049808 -
Tan09g1648 366 CDD Bbox1_BBX-like 22 65 IPR049808 -
Tan09g1648 366 ProSiteProfiles CCT domain profile. 293 335 IPR010402 GO:0005515(InterPro)
Tan09g1648 366 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 16 351 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
Tan09g1648 366 Pfam B-box zinc finger 63 108 IPR000315 GO:0008270(InterPro)
Tan09g1648 366 Pfam B-box zinc finger 21 61 IPR000315 GO:0008270(InterPro)
Tan09g1648 366 SMART bboxneu5 66 108 IPR000315 GO:0008270(InterPro)
Tan09g1648 366 SMART bboxneu5 18 65 IPR000315 GO:0008270(InterPro)
Tan09g1648 366 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270(InterPro)
Tan09g1648 366 Pfam CCT motif 293 335 IPR010402 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1854 Tan-Chr4:58243815 Tan09g1648 Tan-Chr9:68139619 1.50E-26 dispersed
Tan06g1564 Tan-Chr6:24504335 Tan09g1648 Tan-Chr9:68139619 4.20E-07 dispersed
Tan09g1648 Tan-Chr9:68139619 Tan09g1918 Tan-Chr9:70204446 2.70E-08 dispersed
Tan02g2785 Tan-Chr2:96133046 Tan09g1648 Tan-Chr9:68139619 3.00E-67 transposed
Tan08g0825 Tan-Chr8:9939141 Tan09g1648 Tan-Chr9:68139619 1.20E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28364 PF00643 zf-B_box 6.60E-07 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1648 - - - 0.0