Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1693 ATGAACTCTTCTTCTTCTTCTTCATCTTCTTCTTCTCCAAATTGGCTGGCTTTCTCTCTCTCTAACAATCCCAACTCTCTCTCTCTCTACCATCATCCTAATCCTCCTGATCTCTCTATCTTCTCCCCCAAGCTCGAGGACTTTCTCCGGGGATCACCTACTCCCCCTCCGCCGCCGTCCTTTCACTTCTCTCCCCATCAAACTCCAGCCACTTTTTCTGATCAATCTCAGCTCTGTGATTCTGATCTCAAAACCATCGCCGCTAGTTTCCTCCGTGGACCTCCCACTCCCTTGCCCCTCCACGCGCCGCCGCAGCACCCTCCTCAGCCTGATACCCCACCGCCGCCACCCAAGAAGGCCGTTGATACTTTTGGCCAACGTACCTCCATCTACCGCGGTGTTACAAGGCATAGATGGACTGGTCGATATGAAGCTCATTTGTGGGATAACAGTTGCAGAAGAGAGGGTCAGAGTAGAAAAGGAAGACAAGTTTATTTGGGTGGTTATGACAAAGAAGAAAAAGCAGCTAGAGCTTATGATCTCGCTGCTCTCAAATACTGGGGTCCGACCACCACCACCAACTTTCCGGTGTCGGATTACGAAAAAGAGCTGGAGGATATGAAGAACATGACTAGACAAGAATTTGTTGCTTCATTAAGAAGGAAAAGCAGCGGTTTTTCTAGAGGAGCTTCTATTTACAGAGGTGTAACAAGGCACCACCAACATGGCAGATGGCAAGCAAGAATCGGAAGGGTTGCTGGCAACAAAGATCTCTACCTTGGAACATTCAGCACTCAGGAAGAAGCAGCCGAGGCGTATGACATTGCAGCCATCAAATTCCGAGGCCTCAATGCAGTCACCAACTTCGACATCAGTCGCTACGACGTAAAGAGCATTGCAAGCAGCAACCTCCCCATCGGAGGGATGTCGGGCACCAAATCGAAAACCGCCTCCGACTCTGCTGCCTCCGATGGAGGCAGCCGATCAACCGAAGAACGCGACGTACACCATTCTCCTGCGTCCTCCACCGTGAATTACATTTCGTCTCAGTCCAACAACTCAACTCTAAGCTTCGCAATGCCCATCAAACCGGACCCATCGTCCGATCAATACTGGTCCTTGCTCGGCTACCACCCCAGCACCTTCAACACAAACCTCCCCAAACCCGACAACATTCCACCGCCACCGTCATCGTCATCGTCATTGACAATGTTTCAACAATCTTCAAACACCGGATCCACAATGTTTTCCGCCATCCCCGACCTACCTTCGAGCGGTCCACCACTCTCCGAAGGTGGTGATGTATATGACGGTGTTTACGTCCAACAACAATATGCAACACCAATTGCATTGAGTAGCGGAATAAGCATTGAGATGGGGCAATCAATGAGGGGGTTCGAAGCTCATGCAAAACCAAGCCTTTTTCAAACGCCAATATTTGGAATAGAATGA 1452 50.0 MNSSSSSSSSSSPNWLAFSLSNNPNSLSLYHHPNPPDLSIFSPKLEDFLRGSPTPPPPPSFHFSPHQTPATFSDQSQLCDSDLKTIAASFLRGPPTPLPLHAPPQHPPQPDTPPPPPKKAVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSDYEKELEDMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIASSNLPIGGMSGTKSKTASDSAASDGGSRSTEERDVHHSPASSTVNYISSQSNNSTLSFAMPIKPDPSSDQYWSLLGYHPSTFNTNLPKPDNIPPPPSSSSSLTMFQQSSNTGSTMFSAIPDLPSSGPPLSEGGDVYDGVYVQQQYATPIALSSGISIEMGQSMRGFEAHAKPSLFQTPIFGIE 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 68529824 68533442 + Tan0005268.1 Tan09g1693 764036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1693 483 CDD AP2 231 292 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1693 483 ProSiteProfiles AP2/ERF domain profile. 130 196 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1693 483 MobiDBLite consensus disorder prediction 96 120 - -
Tan09g1693 483 MobiDBLite consensus disorder prediction 384 407 - -
Tan09g1693 483 SUPERFAMILY DNA-binding domain 231 292 IPR016177 GO:0003677(InterPro)
Tan09g1693 483 MobiDBLite consensus disorder prediction 90 123 - -
Tan09g1693 483 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 39 350 - -
Tan09g1693 483 MobiDBLite consensus disorder prediction 50 64 - -
Tan09g1693 483 MobiDBLite consensus disorder prediction 26 77 - -
Tan09g1693 483 FunFam AP2-like ethylene-responsive transcription factor ANT 129 198 - -
Tan09g1693 483 Gene3D AP2/ERF domain 130 198 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1693 483 Gene3D AP2/ERF domain 232 292 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1693 483 SMART rav1_2 232 296 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1693 483 SMART rav1_2 130 202 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1693 483 MobiDBLite consensus disorder prediction 305 325 - -
Tan09g1693 483 SUPERFAMILY DNA-binding domain 129 198 IPR016177 GO:0003677(InterPro)
Tan09g1693 483 CDD AP2 129 198 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1693 483 FunFam AP2-like ethylene-responsive transcription factor 231 292 - -
Tan09g1693 483 MobiDBLite consensus disorder prediction 305 348 - -
Tan09g1693 483 ProSiteProfiles AP2/ERF domain profile. 232 290 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1693 483 Pfam AP2 domain 131 188 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1693 483 Pfam AP2 domain 233 282 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1693 483 PRINTS Ethylene responsive element binding protein signature 272 292 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1693 483 PRINTS Ethylene responsive element binding protein signature 131 142 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g0731 Tan-Chr7:11708920 Tan09g1693 Tan-Chr9:68529824 5.80E-98 dispersed
Tan09g1597 Tan-Chr9:67738656 Tan09g1693 Tan-Chr9:68529824 9.80E-72 dispersed
Tan09g1693 Tan-Chr9:68529824 Tan10g1640 Tan-Chr10:31967562 1.50E-46 dispersed
Tan09g1693 Tan-Chr9:68529824 Tan08g1184 Tan-Chr8:28966042 5.60E-99 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28370 PF00847 AP2 3.50E-13 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1693 K09285 - csv:101210453 585.874