Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan09g1728 | ATGAGAGGTTCTGGAAGGAGATTGACCCAGAAAGAATCTGGCAAATGTTCTCACTCCAAGGTGGAAAATGGATCAGAATTGATCTTACCTCTGAAGTTGAAAAGGTGTAGCAAAATATCCCATTCCAAACAGAAAAAATCAAAAACGAAATCACATGCACAGGCAATTGGTTCAACATTGAAGAGGAGACCTGTTCCTAAATCCTTGAGCAAGGGGAATAAAAATGTGACAATTAGACAACTGGCTGGTAAAAAATTTCTGCTAAAAAGATTTGATTCAAAATCTTCCAAGGAGTTACTTTTGTCTAAGCTTCAAGGTGGAAAATCCCTGCCATCGACTAGTACGAAAGGGAATGAGCCGGTGGCCAAGATAAACCAACAAAGGAAAAGGAGGAAGAACAAAGGAAAAAAGGAAAAAGTGGAGTTAGATGAAGCTTCTCGCCTACAGAGGAGAACAAGATACCTAATAATTAAAATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGCCAGAGTCGAGAAAAAATTAAGCCAGAAAAGGAACTCCAAAGAGCCATGAAGCAGATATTAAAGTGCAAACTTGGAATCCGTGATGCTATTCGCCAGCTGGATTTGCTTGGTTCAGTAGGATGCATTGAAGACTCTGTTATTGGTCCTGATGGATCTGTCTACCACGAACATATATTCTGTGCAAAATGCAAGTTGCGTGAAGCTTTTCCAGACAATGACATTATACTTTGCGATGGGACATGCAACTGTGCTTTTCACCAAAAATGTCTGGATCCACCATTAGACACGGAGAATATTCCTCCTGGAGACCAGGGTTGGTTTTGTAAATTTTGTGAGTGCAAGATGGAAATATTAGAAGGAATGAATGCACATCTTGGTACTCGGTTCTCAATGAACATTAGTTGGGAGGACATTTTCAAAGAAGAAGCTGCTTTCCCAGATGGTGGTAATGCATTGCATAATCATGAGGAAGAGTGGCCCTCAGATGATTCTGCGGATGATGACTATGATCCAGATAAGAAGGAGAATGGCTACGACAACCAAAGCGGGGAAGAAAATGATAAGGATGTTTTGGAGGAGTCGAGTAGTTCAACCAGCTTGAGTTGGTCTTTAGATGGCGAGGATTTAGCTGATAGAGATGGTATTGGATGTGAAGATCACTTTGGTGTTAGCAGCAGCATAGTTTCTGATGGCTCCATTGAAGAGGGTATCACATGTGGCCGTCGGCAGCGGCAAGCTGTTGATTATAAAAAGTTATATGTCGAAATGTTTGGAAAGGATGCTCCAGCTCAAGAACAAGTTAGTGAAGATGAGGACTGGGGACCTGCAAAAAGAAGACGGAGAGAAAAGGAATGTGATGCTGCGAGTACTCTTATGTCCCTTTGTGAAAGCGAAAAAAAGAGTGAAGACATTGACATGGAAGCAGAGAAGAAACTTCTCAATTTGCAAAGTAGATCGTTTTTCAGAATTCCTCGTTATGCAGTTGAGAAACTTCGCCAAGTGTTTGCTGATAATGAACTTCCCTCTAGAGATGTCAAGGAGAACCTTTCAAAAGAATTGGGTCTTGATGCTGAAAAGGTCAGCAAATGGTTCAAGAATGCACGATATTCTGCCCTAAGAACTAGAAAGGCAGAGGGAGCAACAAAATCCCATAGTCCTAATAAGACTTCCAATGAGTCCAGATTAGCAGATTCAAAGGAAATGGCTGCAAATCTTCTTTCATCAGAGGACGCACCAATAAAAGAACTGCAGCGGAAATGGCACAATAGTCATTACAAGAAAAACCAGCACAGAAAATCATCACTTGTATCTTCCAACAATAACAAGGGTGCTTTTGAGTTTGGTGATGATATAAGCTTGAAGAATCTCCTAAAGAATAGAAAAACAAAGGTACAGAAGAGGGTTAAATTTGTAGCTAGAGGTGGAGGTCAAGAAGCAGAAGTGGAGATGGAGAGACTGTGTAAAATTAAGGGTAGATTAGAGATAATGAAGCAGAAATTACTTAGACTATCAAATAAGAAAGATGAAGGGATTTTAGATAGGTCACACTTGTTTGGACAGTCTATTGTATATGTTCCTGTGGCAGTGTTAAAGGAAAAGCTTTGA | 2133 | 40.46 | MRGSGRRLTQKESGKCSHSKVENGSELILPLKLKRCSKISHSKQKKSKTKSHAQAIGSTLKRRPVPKSLSKGNKNVTIRQLAGKKFLLKRFDSKSSKELLLSKLQGGKSLPSTSTKGNEPVAKINQQRKRRKNKGKKEKVELDEASRLQRRTRYLIIKMKLEQNLIDAYSGEGWKGQSREKIKPEKELQRAMKQILKCKLGIRDAIRQLDLLGSVGCIEDSVIGPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLDTENIPPGDQGWFCKFCECKMEILEGMNAHLGTRFSMNISWEDIFKEEAAFPDGGNALHNHEEEWPSDDSADDDYDPDKKENGYDNQSGEENDKDVLEESSSSTSLSWSLDGEDLADRDGIGCEDHFGVSSSIVSDGSIEEGITCGRRQRQAVDYKKLYVEMFGKDAPAQEQVSEDEDWGPAKRRRREKECDAASTLMSLCESEKKSEDIDMEAEKKLLNLQSRSFFRIPRYAVEKLRQVFADNELPSRDVKENLSKELGLDAEKVSKWFKNARYSALRTRKAEGATKSHSPNKTSNESRLADSKEMAANLLSSEDAPIKELQRKWHNSHYKKNQHRKSSLVSSNNNKGAFEFGDDISLKNLLKNRKTKVQKRVKFVARGGGQEAEVEMERLCKIKGRLEIMKQKLLRLSNKKDEGILDRSHLFGQSIVYVPVAVLKEKL | 710 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 68817191 | 68827196 | + | Tan0001027.2 | Tan09g1728 | 764071 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan09g1728 | 710 | ProSiteProfiles | Zinc finger PHD-type profile. | 233 | 290 | IPR019787 | - | |
Tan09g1728 | 710 | MobiDBLite | consensus disorder prediction | 322 | 381 | - | - | |
Tan09g1728 | 710 | PANTHER | POLYCOMB-LIKE TRANSCRIPTION FACTOR | 32 | 704 | - | GO:0003677(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0006325(PANTHER)|GO:0006355(PANTHER) | |
Tan09g1728 | 710 | FunFam | pathogenesis-related homeodomain protein-like | 227 | 287 | - | - | |
Tan09g1728 | 710 | ProSiteProfiles | 'Homeobox' domain profile. | 490 | 550 | IPR001356 | GO:0003677(InterPro) | |
Tan09g1728 | 710 | CDD | PHD_PRHA_like | 235 | 287 | IPR045876 | - | |
Tan09g1728 | 710 | CDD | homeodomain | 498 | 551 | IPR001356 | GO:0003677(InterPro) | |
Tan09g1728 | 710 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Tan09g1728 | 710 | MobiDBLite | consensus disorder prediction | 440 | 457 | - | - | |
Tan09g1728 | 710 | Pfam | PHD-finger | 236 | 287 | IPR019787 | - | |
Tan09g1728 | 710 | MobiDBLite | consensus disorder prediction | 106 | 144 | - | - | |
Tan09g1728 | 710 | MobiDBLite | consensus disorder prediction | 346 | 368 | - | - | |
Tan09g1728 | 710 | MobiDBLite | consensus disorder prediction | 37 | 74 | - | - | |
Tan09g1728 | 710 | Pfam | Homeodomain | 501 | 545 | IPR001356 | GO:0003677(InterPro) | |
Tan09g1728 | 710 | Gene3D | - | 493 | 564 | - | - | |
Tan09g1728 | 710 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 227 | 284 | IPR013083 | - | |
Tan09g1728 | 710 | SUPERFAMILY | FYVE/PHD zinc finger | 226 | 293 | IPR011011 | - | |
Tan09g1728 | 710 | FunFam | pathogenesis-related homeodomain protein | 492 | 556 | - | - | |
Tan09g1728 | 710 | MobiDBLite | consensus disorder prediction | 437 | 457 | - | - | |
Tan09g1728 | 710 | MobiDBLite | consensus disorder prediction | 106 | 122 | - | - | |
Tan09g1728 | 710 | SUPERFAMILY | Homeodomain-like | 494 | 554 | IPR009057 | - | |
Tan09g1728 | 710 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Tan09g1728 | 710 | SMART | PHD_3 | 235 | 288 | IPR001965 | - | |
Tan09g1728 | 710 | MobiDBLite | consensus disorder prediction | 550 | 574 | - | - | |
Tan09g1728 | 710 | ProSitePatterns | Zinc finger PHD-type signature. | 236 | 287 | IPR019786 | - | |
Tan09g1728 | 710 | SMART | HOX_1 | 492 | 554 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan09g1727 | Tan-Chr9:68817191 | Tan09g1728 | Tan-Chr9:68817191 | 0.00E+00 | tandem | |
Tan09g1728 | Tan-Chr9:68817191 | Tan09g1729 | Tan-Chr9:68817191 | 1.50E-305 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28372 | PF00628 | PHD | 9.50E-10 | CL0390 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan09g1728 | - | - | - | 0.0 |