Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1729 ATGAGAGGTTCTGGAAGGAGATTGACCCAGAAAGAATCTGGCAAATGTTCTCACTCCAAGGTGGAAAATGGATCAGAATTGATCTTACCTCTGAAGTTGAAAAGGTGTAGCAAAATATCCCATTCCAAACAGAAAAAATCAAAAACGAAATCACATGCACAGGCAATTGGTTCAACATTGAAGAGGAGACCTGTTCCTAAATCCTTGAGCAAGGGGAATAAAAATGTGACAATTAGACAACTGGCTGGTAAAAAATTTCTGCTAAAAAGATTTGATTCAAAATCTTCCAAGGAGTTACTTTTGTCTAAGCTTCAAGGTGGAAAATCCCTGCCATCGACTAGTACGAAAGGGAATGAGCCGGTGGCCAAGATAAACCAACAAAGGAAAAGGAGGAAGAACAAAGGAAAAAAGGAAAAAGTGGAGTTAGATGAAGCTTCTCGCCTACAGAGGAGAACAAGATACCTAATAATTAAAATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGCCAGAGTCGAGAAAAAATTAAGCCAGAAAAGGAACTCCAAAGAGCCATGAAGCAGATATTAAAGTGCAAACTTGGAATCCGTGATGCTATTCGCCAGCTGGATTTGCTTGGTTCAGTAGGATGCATTGAAGACTCTGTTATTGGTCCTGATGGATCTGTCTACCACGAACATATATTCTGTGCAAAATGCAAGTTGCGTGAAGCTTTTCCAGACAATGACATTATACTTTGCGATGGGACATGCAACTGTGCTTTTCACCAAAAATGTCTGGATCCACCATTAGACACGGAGAATATTCCTCCTGGAGACCAGGGTTGGTTTTGTAAATTTTGTGAGTGCAAGATGGAAATATTAGAAGGAATGAATGCACATCTTGGTACTCGGTTCTCAATGAACATTAGTTGGGAGGACATTTTCAAAGAAGAAGCTGCTTTCCCAGATGGTGGTAATGCATTGCATAATCATGAGGAAGAGTGGCCCTCAGATGATTCTGCGGATGATGACTATGATCCAGATAAGAAGGAGAATGGCTACGACAACCAAAGCGGGGAAGAAAATGATAAGGATGTTTTGGAGGAGTCGAGTAGTTCAACCAGCTTGAGTTGGTCTTTAGATGGCGAGGATTTAGCTGATAGAGATGGTATTGGATGTGAAGATCACTTTGGTGTTAGCAGCAGCATAGTTTCTGATGGCTCCATTGAAGAGGGTATCACATGTGGCCGTCGGCAGCGGCAAGCTGTTGATTATAAAAAGTTATATGTCGAAATGTTTGGAAAGGATGCTCCAGCTCAAGAACAAGTTAGTGAAGATGAGGACTGGGGACCTGCAAAAAGAAGACGGAGAGAAAAGGAATGTGATGCTGCGAGTACTCTTATGTCCCTTTGTGAAAGCGAAAAAAAGAGTGAAGACATTGACATGGAAGCAGAGAAGAAACTTCTCAATTTGCAAAGTAGATCGTTTTTCAGAATTCCTCGTTATGCAGTTGAGAAACTTCGCCAAGTGTTTGCTGATAATGAACTTCCCTCTAGAGATGTCAAGGAGAACCTTTCAAAAGAATTGGGTCTTGATGCTGAAAAGGTAACAACATTCCCACAAGTTATCAAGTACTGGATTTTTTTTTAG 1650 40.97 MRGSGRRLTQKESGKCSHSKVENGSELILPLKLKRCSKISHSKQKKSKTKSHAQAIGSTLKRRPVPKSLSKGNKNVTIRQLAGKKFLLKRFDSKSSKELLLSKLQGGKSLPSTSTKGNEPVAKINQQRKRRKNKGKKEKVELDEASRLQRRTRYLIIKMKLEQNLIDAYSGEGWKGQSREKIKPEKELQRAMKQILKCKLGIRDAIRQLDLLGSVGCIEDSVIGPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLDTENIPPGDQGWFCKFCECKMEILEGMNAHLGTRFSMNISWEDIFKEEAAFPDGGNALHNHEEEWPSDDSADDDYDPDKKENGYDNQSGEENDKDVLEESSSSTSLSWSLDGEDLADRDGIGCEDHFGVSSSIVSDGSIEEGITCGRRQRQAVDYKKLYVEMFGKDAPAQEQVSEDEDWGPAKRRRREKECDAASTLMSLCESEKKSEDIDMEAEKKLLNLQSRSFFRIPRYAVEKLRQVFADNELPSRDVKENLSKELGLDAEKVTTFPQVIKYWIFF 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 68817191 68827196 + Tan0001027.3 Tan09g1729 764072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1729 549 ProSiteProfiles Zinc finger PHD-type profile. 233 290 IPR019787 -
Tan09g1729 549 MobiDBLite consensus disorder prediction 322 381 - -
Tan09g1729 549 MobiDBLite consensus disorder prediction 346 368 - -
Tan09g1729 549 MobiDBLite consensus disorder prediction 37 74 - -
Tan09g1729 549 CDD PHD_PRHA_like 235 287 IPR045876 -
Tan09g1729 549 CDD homeodomain 498 546 IPR001356 GO:0003677(InterPro)
Tan09g1729 549 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 32 537 - GO:0003677(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0006325(PANTHER)|GO:0006355(PANTHER)
Tan09g1729 549 MobiDBLite consensus disorder prediction 1 19 - -
Tan09g1729 549 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 284 IPR013083 -
Tan09g1729 549 FunFam pathogenesis-related homeodomain protein-like 227 287 - -
Tan09g1729 549 SUPERFAMILY FYVE/PHD zinc finger 226 293 IPR011011 -
Tan09g1729 549 Pfam PHD-finger 236 287 IPR019787 -
Tan09g1729 549 MobiDBLite consensus disorder prediction 106 122 - -
Tan09g1729 549 MobiDBLite consensus disorder prediction 106 144 - -
Tan09g1729 549 MobiDBLite consensus disorder prediction 1 23 - -
Tan09g1729 549 SMART PHD_3 235 288 IPR001965 -
Tan09g1729 549 ProSitePatterns Zinc finger PHD-type signature. 236 287 IPR019786 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g1727 Tan-Chr9:68817191 Tan09g1729 Tan-Chr9:68817191 1.50E-305 dispersed
Tan09g1728 Tan-Chr9:68817191 Tan09g1729 Tan-Chr9:68817191 1.50E-305 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28373 PF00628 PHD 6.80E-10 CL0390 Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1729 - - - 0.0