Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1762 ATGGGCTCCCTTCCCAATTCCTTCTCCCTCTCTCTGATTTTCCTCCTCACCGTCGTCTCTCCGGCCTCCGCCGCCGCCAGCGACCGAGCTCTAAAGCTTCTCCTTCCCCACCCATTTCTGTACCGCTTCAAGGCCATAGAGGAAACTGTTTTTGTTGCTTCTCCATCTCCGCCACCGCCTCTGTTGCCCTCTGCTCCTCCACCGGAGGAGAAACCCATCTACTCTCCATTTCGGCCGAGCATGGCGGTGGTGGTCGGCGTTCTGACCACCACTTTCTCCATCACGTTCCTTCTCCTTCTCTACGCCAAGCACTGCAAGCGTGGGAATGCGGTGGTGGTCGGGTACTCGAGACACCCCAATTCGATGATGGGCGTTCCGAGCTTCACGACGAGGAAGAACTCTGGCATCGACCAGGCAGTAATCGAATCGCTGCCGATTTTCCGATTCGGGTCACTGAGCGGGCAGAAGGAGGGACTCGAATGCGCCGTTTGCCTCAACAAATTCGAGCAAACGGAGATTCTGAGACTCCTACCGAAATGCAAACACGCCTTCCATGTCGAATGCGTCGATACTTGGCTTGACGCCCACTCCACTTGCCCTCTCTGCCGCTACAGAGTCGACCCCGAAGACGTCTTATTAGTCGAAGACGTCAATATATTTCTCCACAACCCGGCGGCGGCGCCGCCGCCGCGGGATTCTAACTCCAAGGATGTGGTGTTGAACTTAGAACAGGGGAGAAGAAGCAACAAGGCTGGATCCGGGAGAGTCTCCGGCAGACACTCGTCGGTGGGCGAGAAGCAAACCGGCGAGTCCAGTCACCGGGATCCGGCATTGTTGAGACGGTCCCTCGACAGCAAGAGAAGCGAAACGGTGGCGGTCGGTTGCTTCGATCGACACCGAAAAGACGGGCTAACTTTGCCGGACGAGAAAACGAATCAGAATCAGAATCAAAACAGATTCGAGCACCGGATCATCGTATCACCGAGGGCGCCGGTGGTTGTGCAGGGGCAGCAGAGATGGAGCGATGTACAGGCGTCGGATCTGCTGTATCTACGGTCAGAAATGATAATATCTGACAGCCGCAGGTTTTCGGTAGCTTCATTACCACCGGAATTAAAGAGACAGCGACGGATGGGGATCATGGGGAAGCAGGCCGGAAAAGGGTCCGGGATAATGATGGCAGACGTGTAA 1191 56.0 MGSLPNSFSLSLIFLLTVVSPASAAASDRALKLLLPHPFLYRFKAIEETVFVASPSPPPPLLPSAPPPEEKPIYSPFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVVGYSRHPNSMMGVPSFTTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLNKFEQTEILRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLVEDVNIFLHNPAAAPPPRDSNSKDVVLNLEQGRRSNKAGSGRVSGRHSSVGEKQTGESSHRDPALLRRSLDSKRSETVAVGCFDRHRKDGLTLPDEKTNQNQNQNRFEHRIIVSPRAPVVVQGQQRWSDVQASDLLYLRSEMIISDSRRFSVASLPPELKRQRRMGIMGKQAGKGSGIMMADV 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 69147737 69148927 - Tan0013128.1 Tan09g1762 764105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1762 396 Pfam Ring finger domain 160 203 IPR001841 -
Tan09g1762 396 ProSiteProfiles Zinc finger RING-type profile. 161 203 IPR001841 -
Tan09g1762 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 210 IPR013083 -
Tan09g1762 396 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 60 364 - -
Tan09g1762 396 MobiDBLite consensus disorder prediction 243 265 - -
Tan09g1762 396 MobiDBLite consensus disorder prediction 266 285 - -
Tan09g1762 396 FunFam RING-H2 finger protein ATL43 136 210 - -
Tan09g1762 396 CDD RING-H2_EL5-like 160 203 - -
Tan09g1762 396 MobiDBLite consensus disorder prediction 243 285 - -
Tan09g1762 396 SMART ring_2 161 202 IPR001841 -
Tan09g1762 396 SUPERFAMILY RING/U-box 141 208 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2024 Tan-Chr5:70384348 Tan09g1762 Tan-Chr9:69147737 7.30E-13 dispersed
Tan08g0534 Tan-Chr8:5211964 Tan09g1762 Tan-Chr9:69147737 1.00E-24 dispersed
Tan09g1238 Tan-Chr9:64747133 Tan09g1762 Tan-Chr9:69147737 7.00E-41 dispersed
Tan09g1762 Tan-Chr9:69147737 Tan11g0601 Tan-Chr11:5349365 5.10E-21 dispersed
Tan09g1762 Tan-Chr9:69147737 Tan09g1636 Tan-Chr9:67998134 1.90E-23 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1762 K19041 - csv:101203916 601.668