Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1784 ATGGCACAGGTTTCTCAGTTACCTTGCGACGGCGATGGCATTTGCATGCTCTGCAAGGCCAAGCCTTCCAGCTTGGAGACCATCACTTGCAAAACTTGCGTCACACCTTGGCACGTCGATTGTCTCTCAAATCCCCCTGATACATTGGCATCTACCCTTCAATGGGACTGCCCCGACTGTGACGGTTCCCCTCCTTCCGAAGATGTTCCCCTTCCACCGCCCACTGCGCCTTCCAGTGACCTGGTTGCCTCGATTCGAGCCATTGAGGCTGATGCCTCCCTGACTGACCGCGAGAAGGCAAAGAAGCGCCAAGAACTTCTCAGTGGAAAGTCTCAGTCCGACAAGGATGATCACAATGCCAACAAGGAAATGAGAAAAGGGGGGGACGATGTTTTGGATTTGTTCGACGAGAGATTAAACTGTTCCTTCTGCATGCAGTTACCTGAAAGGCCAGTCACTACTCCATGTGGCCACAATTTCTGTTTAAAATGTTTCCAGAAGTGGATTGGACAAGGAAAGAACACTTGTGCAAAGTGCCGCTGTGTGATTCCCTCCAAAATGGCTAGCCAGCCCCGTATTAATTCTACCCTTGTTGTGGCCATTCGTATGGCTAAATTGTCAAAATCAATTGTTTCTGGAGGACCTCAGAAGGTTTATCATTTTGTCCACAATAAAAATAGACCAGATAAAGCCTATACCACTGACCGGGCGCAAAAAAAGGGGAAGGCTAATGCTGCAAGTGGAAAAATATTTGTTACAATTCCATCTGATCATTTTGGCCCTATTCCTGCTGAAAATGATCCTGAGAGAAACCAGGGTGTTCTGGTTGGTGAATGCTGGGAGGATAGGTTAGAATGTCGTCAATGGGGTGCTCACTTTCCACATGTTGCAGGTATAGCGGGACAGTCAAATAATGGTGCACAATCAGTGGTTCTTTCTGGGGGCTACCAGGATGATGAAGACCATGGGGAGTGGTTCCTCTACACTGGAAGTGGAGGTAGAGACCTTAGTGGGAACAAGCGTACAAGCAAGGATCAGTCCTTTGACCAGAAATTTGAAAAATACAACAAAGCGCTACAAGTTAGTTGCTTGAAAGGTTATCCTGTTAGGGTTGTTAGATCTCACAAAGAAAAGCGTTCCTCATATGCTCCAGAGAAGGGGTTGCGGTATGATGGAATTTATAGGATTGAGAAGTGTTGGCGTAAAGTGGGAATTCAGGGCTTTAAGGTATGTCGGTATTTATTTGTTAGATGCGACAATGATCCTGCTCCATGGACAAGTGATGAACATGGAGATCGACGTAGACCCTTACCTGCAATTCCAGAGTTGAAAACAGCGACAAATATTACGGAGAGGAAGGAAGGTCCATCATGGGACTTTGACGAGAAAGATAGTCGGTGGAAGTGGACCAAAGCTCCACCGACGAGCAAGAAACCAGTTGAAACCGAAGATTCTGCTTCTGGGGAGAGGTCAAGGACAAAAATTAGGCAATCACATAATATGAATGTCCGAGAAAGGTTACTGAAAGGTTGTGTAATTATATTGAGTAAAGTCGCTAAAAAATGA 1566 46.1 MAQVSQLPCDGDGICMLCKAKPSSLETITCKTCVTPWHVDCLSNPPDTLASTLQWDCPDCDGSPPSEDVPLPPPTAPSSDLVASIRAIEADASLTDREKAKKRQELLSGKSQSDKDDHNANKEMRKGGDDVLDLFDERLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKNTCAKCRCVIPSKMASQPRINSTLVVAIRMAKLSKSIVSGGPQKVYHFVHNKNRPDKAYTTDRAQKKGKANAASGKIFVTIPSDHFGPIPAENDPERNQGVLVGECWEDRLECRQWGAHFPHVAGIAGQSNNGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQKFEKYNKALQVSCLKGYPVRVVRSHKEKRSSYAPEKGLRYDGIYRIEKCWRKVGIQGFKVCRYLFVRCDNDPAPWTSDEHGDRRRPLPAIPELKTATNITERKEGPSWDFDEKDSRWKWTKAPPTSKKPVETEDSASGERSRTKIRQSHNMNVRERLLKGCVIILSKVAKK 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 69369748 69375269 + Tan0016200.2 Tan09g1784 764127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1784 521 MobiDBLite consensus disorder prediction 93 125 - -
Tan09g1784 521 Gene3D - 240 438 IPR036987 -
Tan09g1784 521 ProSiteProfiles YDG domain profile. 269 417 IPR003105 -
Tan09g1784 521 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 240 435 - -
Tan09g1784 521 SUPERFAMILY FYVE/PHD zinc finger 7 63 IPR011011 -
Tan09g1784 521 SUPERFAMILY RING/U-box 132 187 - -
Tan09g1784 521 SMART ring_2 141 179 IPR001841 -
Tan09g1784 521 ProSiteProfiles Zinc finger RING-type profile. 141 180 IPR001841 -
Tan09g1784 521 MobiDBLite consensus disorder prediction 482 500 - -
Tan09g1784 521 SMART G9a_1 264 421 IPR003105 -
Tan09g1784 521 Pfam Zinc finger, C3HC4 type (RING finger) 141 179 IPR018957 GO:0046872(InterPro)
Tan09g1784 521 ProSitePatterns Zinc finger PHD-type signature. 15 60 IPR019786 -
Tan09g1784 521 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 509 IPR045134 GO:0010216(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Tan09g1784 521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 207 IPR013083 -
Tan09g1784 521 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 87 208 - -
Tan09g1784 521 SUPERFAMILY PUA domain-like 243 437 IPR015947 -
Tan09g1784 521 SMART PHD_3 14 61 IPR001965 -
Tan09g1784 521 ProSiteProfiles Zinc finger PHD-type profile. 12 63 IPR019787 -
Tan09g1784 521 CDD RING-HC_ORTHRUS_rpt1 137 184 IPR047498 -
Tan09g1784 521 MobiDBLite consensus disorder prediction 469 500 - -
Tan09g1784 521 Pfam SAD/SRA domain 271 420 IPR003105 -
Tan09g1784 521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 62 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g1784 Tan-Chr9:69369748 Tan09g2440 Tan-Chr9:73956594 8.60E-287 dispersed
Tan09g1783 Tan-Chr9:69369748 Tan09g1784 Tan-Chr9:69369748 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1784 K10638 - csv:101219001 946.806