Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1827 ATGTGGACATTGGGATATGATGATAATATTGGTGGAGAATTTTTCTTCTCTGATCACCCCTTTCATGGCGGCCACAAGCTTCGCCCTCTTGTTCCTCGCCCATTGCCTTCTATTCGTGTCAATGGCGCCAACTTCTCTTCCCAATATTACCATCTAGATAATGTTTGGAATGATGAAAGCAAGAGAGAGTTGTTGAATAAGGATAATAGTTCATCATCTTCATCGGTAATAGTAAGTTCATCAAGGTGGAATCCAACGCCGGAGCAGTTGAGAATTCTGGAGGAGCTTTACCGGCGGGGGACTCGAACGCCGTCCGCCGACCAAATCCAACACATCACCGCCCAACTCCGCCGCTTCGGCAAAATCGAAGGCAAAAATGTCTTCTATTGGTTTCAAAATCACAAGGCTAGAGAGCGCCAAAAACGACGCCGTCAAACTGCCGCTGAACAAACCAAATATTCAGAGGCAGAAAAGGGGTACGAAATTCAACAGACAAAGACGAATTGCAGCTGGCCGAGGCCAACACTAGCACCCTCTAAAATCTGCAATGCTACACTTTCACAGAGAAGAACAGAAGTAGTAGAATTGGAAGAAGAAGAGTCAGTGGAAGAAAGAGATGGGACATGGAACAATGATACAGTGAATTGTCAACTCATAAACCCTACAAGGAAAACCCGACATCTAAACGCTGTCGTCGAACCACGCAGCGATGATAGACGTCGACACAATGTCGACGACGAGGAATCTGAAACGACGACGCTTCAGCTGTTTCCTCTCCGCAGCACGAAGTTCTGCAAATACGACGACGAGAGGAAGGAACGACGACAAGAAGATCAGCTGGAGATGATGTCGGATTCGGACATGATCAAAAGCTCCACATTTTCTCCCAGTACTTGTAATTTCAAGTTCTTTGAGTTTCTTCCTCTCAAAAACTGA 936 45.94 MWTLGYDDNIGGEFFFSDHPFHGGHKLRPLVPRPLPSIRVNGANFSSQYYHLDNVWNDESKRELLNKDNSSSSSSVIVSSSRWNPTPEQLRILEELYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQTAAEQTKYSEAEKGYEIQQTKTNCSWPRPTLAPSKICNATLSQRRTEVVELEEEESVEERDGTWNNDTVNCQLINPTRKTRHLNAVVEPRSDDRRRHNVDDEESETTTLQLFPLRSTKFCKYDDERKERRQEDQLEMMSDSDMIKSSTFSPSTCNFKFFEFLPLKN 311
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 69661710 69665151 - Tan0005197.1 Tan09g1827 764170
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1827 311 Pfam Homeodomain 81 140 IPR001356 GO:0003677(InterPro)
Tan09g1827 311 CDD homeodomain 82 142 IPR001356 GO:0003677(InterPro)
Tan09g1827 311 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 74 299 IPR044555 GO:0003700(InterPro)|GO:0099402(InterPro)
Tan09g1827 311 ProSiteProfiles 'Homeobox' domain profile. 86 141 IPR001356 GO:0003677(InterPro)
Tan09g1827 311 FunFam WUSCHEL-related homeobox 4 80 147 - -
Tan09g1827 311 SUPERFAMILY Homeodomain-like 80 145 IPR009057 -
Tan09g1827 311 SMART HOX_1 78 145 IPR001356 GO:0003677(InterPro)
Tan09g1827 311 Gene3D - 78 141 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2067 Tan-Chr3:75622919 Tan09g1827 Tan-Chr9:69661710 3.10E-23 transposed
Tan03g2537 Tan-Chr3:78633749 Tan09g1827 Tan-Chr9:69661710 9.60E-14 transposed
Tan11g0257 Tan-Chr11:2041207 Tan09g1827 Tan-Chr9:69661710 1.50E-21 transposed
Tan05g2195 Tan-Chr5:72919538 Tan09g1827 Tan-Chr9:69661710 4.10E-44 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28377 PF00046 Homeodomain 9.90E-20 CL0123 Tan TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1827 - - - 0.0