Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan09g1827 | ATGTGGACATTGGGATATGATGATAATATTGGTGGAGAATTTTTCTTCTCTGATCACCCCTTTCATGGCGGCCACAAGCTTCGCCCTCTTGTTCCTCGCCCATTGCCTTCTATTCGTGTCAATGGCGCCAACTTCTCTTCCCAATATTACCATCTAGATAATGTTTGGAATGATGAAAGCAAGAGAGAGTTGTTGAATAAGGATAATAGTTCATCATCTTCATCGGTAATAGTAAGTTCATCAAGGTGGAATCCAACGCCGGAGCAGTTGAGAATTCTGGAGGAGCTTTACCGGCGGGGGACTCGAACGCCGTCCGCCGACCAAATCCAACACATCACCGCCCAACTCCGCCGCTTCGGCAAAATCGAAGGCAAAAATGTCTTCTATTGGTTTCAAAATCACAAGGCTAGAGAGCGCCAAAAACGACGCCGTCAAACTGCCGCTGAACAAACCAAATATTCAGAGGCAGAAAAGGGGTACGAAATTCAACAGACAAAGACGAATTGCAGCTGGCCGAGGCCAACACTAGCACCCTCTAAAATCTGCAATGCTACACTTTCACAGAGAAGAACAGAAGTAGTAGAATTGGAAGAAGAAGAGTCAGTGGAAGAAAGAGATGGGACATGGAACAATGATACAGTGAATTGTCAACTCATAAACCCTACAAGGAAAACCCGACATCTAAACGCTGTCGTCGAACCACGCAGCGATGATAGACGTCGACACAATGTCGACGACGAGGAATCTGAAACGACGACGCTTCAGCTGTTTCCTCTCCGCAGCACGAAGTTCTGCAAATACGACGACGAGAGGAAGGAACGACGACAAGAAGATCAGCTGGAGATGATGTCGGATTCGGACATGATCAAAAGCTCCACATTTTCTCCCAGTACTTGTAATTTCAAGTTCTTTGAGTTTCTTCCTCTCAAAAACTGA | 936 | 45.94 | MWTLGYDDNIGGEFFFSDHPFHGGHKLRPLVPRPLPSIRVNGANFSSQYYHLDNVWNDESKRELLNKDNSSSSSSVIVSSSRWNPTPEQLRILEELYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQTAAEQTKYSEAEKGYEIQQTKTNCSWPRPTLAPSKICNATLSQRRTEVVELEEEESVEERDGTWNNDTVNCQLINPTRKTRHLNAVVEPRSDDRRRHNVDDEESETTTLQLFPLRSTKFCKYDDERKERRQEDQLEMMSDSDMIKSSTFSPSTCNFKFFEFLPLKN | 311 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 69661710 | 69665151 | - | Tan0005197.1 | Tan09g1827 | 764170 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan09g1827 | 311 | Pfam | Homeodomain | 81 | 140 | IPR001356 | GO:0003677(InterPro) | |
| Tan09g1827 | 311 | CDD | homeodomain | 82 | 142 | IPR001356 | GO:0003677(InterPro) | |
| Tan09g1827 | 311 | PANTHER | WUSCHEL-RELATED HOMEOBOX 1-RELATED | 74 | 299 | IPR044555 | GO:0003700(InterPro)|GO:0099402(InterPro) | |
| Tan09g1827 | 311 | ProSiteProfiles | 'Homeobox' domain profile. | 86 | 141 | IPR001356 | GO:0003677(InterPro) | |
| Tan09g1827 | 311 | FunFam | WUSCHEL-related homeobox 4 | 80 | 147 | - | - | |
| Tan09g1827 | 311 | SUPERFAMILY | Homeodomain-like | 80 | 145 | IPR009057 | - | |
| Tan09g1827 | 311 | SMART | HOX_1 | 78 | 145 | IPR001356 | GO:0003677(InterPro) | |
| Tan09g1827 | 311 | Gene3D | - | 78 | 141 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan03g2067 | Tan-Chr3:75622919 | Tan09g1827 | Tan-Chr9:69661710 | 3.10E-23 | transposed | |
| Tan03g2537 | Tan-Chr3:78633749 | Tan09g1827 | Tan-Chr9:69661710 | 9.60E-14 | transposed | |
| Tan11g0257 | Tan-Chr11:2041207 | Tan09g1827 | Tan-Chr9:69661710 | 1.50E-21 | transposed | |
| Tan05g2195 | Tan-Chr5:72919538 | Tan09g1827 | Tan-Chr9:69661710 | 4.10E-44 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 28377 | PF00046 | Homeodomain | 9.90E-20 | CL0123 | Tan | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan09g1827 | - | - | - | 0.0 |