Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1842 ATGTCTCGCCGCAGCCACGACGACGGCGGTGACGAGAAGCTTTCCGCCGGCGAGGAAGACGATGAAGACGATGCCATTGATGACATGGAAGTCCTTCGGGGAGCCTGTAGGCTTGCTGGAGTTAATCCTGAGGAGTATATTAATCATCCGTCGTCGTCGCTTGCCGCCGGAGATGATTCCGATGAAGTAGATGATTTCGAACTTGTTCGGAATATTCGGAAGCAGTTCTCGATTGCGGACGATGAGCAGCCGTTGAGTATTCTCCCACCGGCGTCTCCGGACGAGGAGGAAGACGATTTCGAGACGCTTCGTCGGATTCAGCGGCGCTTTGGGGCGTATGAAACTGATATCTTGAGCAATAAACCCAATCAATCTTGTGACTTTGATGTGCCTCTGGAGATGGATTCTAACAACACAGCTATTGAGAGACAGACATACCCAGAGAGGTCATCTATGCTAGCCTTTGAAAAGGGAAGCTTGCCAAAGGCTGGATTGGCATTTATTGATGCCATCAAGAAGAATAGGTCCCAGCAGAAGTTTATTCGCAGTAAGATGATTCACCTTGAAGCTAGAATTGAGGAGACCAAAAAGCTCAGAAAACATTTCAAAATTCTCAAAGATTTCCAAGGTTCATGTAGAAGAAGAACAAGTTGTGCACTGTCTCAAACGATAGATCCTCGAGTTCAGTTAATATCAGCTGGAAAACCACAGGCTAAGGATTCATCAAAGAAGGACAAACGATTGTCTGCAATGTATTATGGCCCAGCTGAGAATTCTCATGTTGCATACTACAAAATGGCATTGACAAAGTTTCCACCTTCCGTAGATCGAAAAAGATGGTCCAATGTAGAAAGGGAGAATCTAGGGAAGGGAATACGACAACAATTTCAAGAGATGGTGCTTCAGATCTCGGTGGATCAAATTAGTGGGCTACAAGGATTTTTAGCAGATTCAGATGATCTGGATAACATTCTTGCATCAATAAAAGACCTTGACATTACTCCCGAAAAGATTAGGGAATTTTTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTATCTTCGGGGTCGCTCAGGGGCAGAATGTGAAGCAAGGTGGTTGAATTTTGAAGATCCCCTAATTAATCGGAATGCATGGACTACAAGTGAGGATAAGAATCTTTTGTTTACTATTCAACAGAAAGGGTTGAATAACTGGATTGACATAGCAGTTTCATTGGGTACAAACAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAACGCATCCATATTAAAGAGGGAGTGGACCAAAGATGAGGATGAGAAACTTCAATCTGCTGTTGCTATTCTTGGTGTGGGAGATTGGCAGGCTGTAGCTTCTACTTTAGAAGGACGAACTGGTCCACAGTGCTCTAATAGGTGGAAAAAATCCCTCGACCCAGCTAGGACAAAAAGAGGCTACTTCACCCCAGATGAAGACAGTCGCTTGAAAATTGCTGTACTGCTTTTTGGGCCTAAAAATTGGAACAAGAAAGCCGAATTTTTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTTCAATTGCTTAGATCCTTCCTTGAGAAGATGTAAATGGACAGAAGAGGAGGATTTAAGGCTAGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTGCCGTCACGTACAGATAATGAGTGCCGGAGGAGATGGAAGAAGTTGTTTCCCAATGAAGTTCCTTTGCTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGGGAATCAGAGCGTCCTGCTCTTGGTCCTACTGACTTTCGACCTATACCAAATACAAATTTATTATGTAATACTGATGATCCAAAACCTGCCCCGAAAAGAAATGTGAAAACGAGAAGGATGCCAGTGTCAAGGAAAAATGAAAAGAGTGCTACTGGTGATGCTGATGCTCCTAAGAAGAGGAAATCAAATAACCGGAGGAATCAAGCTGATGCAACTGCTCAGGGCGGTATTGCAAATAATGTCCCAGAGGAGATTAAATCTATAAAACCTCAAAGAAAACGAAATAGGCATGGAGCTTATACTCCTAAGAGGAAAGGGGTTCTGGAGCTAAGTTCTAACAGTGAAAGATGTGCTGAACAGAATTTGGACACTCGGAGCCTCGAGGTGCAGCTGAATGGTAAGGAATCCGAGATGACCAACAATGACTGTGCCGAGGCTGTTGATGAGAATGGTATGGAAGTATGTGAGAACAATGTTGCAGAGAAGCTTTCTAAAAGAGATGTATGCTGTTCAGAACAAGAAGGAAATCAGAACTCTACAGGATCTTCTGGAGTGTCGGTGTTGTCGGAAATGACTAATGACACGGACGAGTACAATCCCTTTATCCTTCCAGATACAGCACTGCTGGCTAGTAGTACTGCTGGGGATGATATTATGGTGAGGAATGGGGAGAGTGTTGCAGACAAAGATCTGGATGACAGTAACAGCTTCTCGTTACCGCTCAATTGCTTAGAACTCAGGACAACTGACAGTGAAGGTGTCAACAGTTATTCTGTTGGTGAAATTACAGACAAAGACGATAACATTTGCAAGCCCCAAGGCAGAAGGAAGAAAAATAGTAAAGGATCAAATGAGAGTCAGGGTTCTTTGGTGGTTTCTGGTCAACAAGGGGAGCTGGAGAGGTCGGGGACGAAGTCCCCTCGTCGTCATAATCAATCAAAGAAGAGAAAGCATAACACTATAAATACGAGTTCATTAGGAACACTGGAGGCAGTTGAAGAGGTCGATGACTGCACTCTCCTTGGCTTTCTGCAAAAAAGATTGAAGAGAACAACCACTCATGAAAAGAAAGTTGATAGCACTCTCCTAGAAGTTGATAATGATCCTACTATTGCCTCGCTCCTCGAGGGTAAATTGAAGAGAAAAAAGCATCTAGCGCCTAGTGGTGGAGGTTAA 2991 43.7 MSRRSHDDGGDEKLSAGEEDDEDDAIDDMEVLRGACRLAGVNPEEYINHPSSSLAAGDDSDEVDDFELVRNIRKQFSIADDEQPLSILPPASPDEEEDDFETLRRIQRRFGAYETDILSNKPNQSCDFDVPLEMDSNNTAIERQTYPERSSMLAFEKGSLPKAGLAFIDAIKKNRSQQKFIRSKMIHLEARIEETKKLRKHFKILKDFQGSCRRRTSCALSQTIDPRVQLISAGKPQAKDSSKKDKRLSAMYYGPAENSHVAYYKMALTKFPPSVDRKRWSNVERENLGKGIRQQFQEMVLQISVDQISGLQGFLADSDDLDNILASIKDLDITPEKIREFLPKVNWDKLASMYLRGRSGAECEARWLNFEDPLINRNAWTTSEDKNLLFTIQQKGLNNWIDIAVSLGTNRTPFQCLSRYQRSLNASILKREWTKDEDEKLQSAVAILGVGDWQAVASTLEGRTGPQCSNRWKKSLDPARTKRGYFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCKWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNECRRRWKKLFPNEVPLLQEARKIQKAALISNFVDRESERPALGPTDFRPIPNTNLLCNTDDPKPAPKRNVKTRRMPVSRKNEKSATGDADAPKKRKSNNRRNQADATAQGGIANNVPEEIKSIKPQRKRNRHGAYTPKRKGVLELSSNSERCAEQNLDTRSLEVQLNGKESEMTNNDCAEAVDENGMEVCENNVAEKLSKRDVCCSEQEGNQNSTGSSGVSVLSEMTNDTDEYNPFILPDTALLASSTAGDDIMVRNGESVADKDLDDSNSFSLPLNCLELRTTDSEGVNSYSVGEITDKDDNICKPQGRRKKNSKGSNESQGSLVVSGQQGELERSGTKSPRRHNQSKKRKHNTINTSSLGTLEAVEEVDDCTLLGFLQKRLKRTTTHEKKVDSTLLEVDNDPTIASLLEGKLKRKKHLAPSGGG 996
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 69769891 69782949 + Tan0015669.1 Tan09g1842 764185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1842 996 MobiDBLite consensus disorder prediction 861 927 - -
Tan09g1842 996 Gene3D - 374 424 - -
Tan09g1842 996 MobiDBLite consensus disorder prediction 14 28 - -
Tan09g1842 996 MobiDBLite consensus disorder prediction 608 725 - -
Tan09g1842 996 ProSiteProfiles Myb-like domain profile. 372 424 IPR001005 -
Tan09g1842 996 CDD SANT 486 527 IPR001005 -
Tan09g1842 996 SUPERFAMILY Homeodomain-like 353 420 IPR009057 -
Tan09g1842 996 ProSiteProfiles Myb-like domain profile. 425 476 IPR001005 -
Tan09g1842 996 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 530 584 IPR017930 -
Tan09g1842 996 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 482 529 IPR017930 -
Tan09g1842 996 ProSiteProfiles Myb-like domain profile. 530 580 IPR001005 -
Tan09g1842 996 SMART sant 276 373 IPR001005 -
Tan09g1842 996 SMART sant 482 531 IPR001005 -
Tan09g1842 996 SMART sant 534 582 IPR001005 -
Tan09g1842 996 SMART sant 376 426 IPR001005 -
Tan09g1842 996 SMART sant 429 478 IPR001005 -
Tan09g1842 996 CDD SANT 432 476 IPR001005 -
Tan09g1842 996 Gene3D - 537 583 - -
Tan09g1842 996 ProSiteProfiles Myb-like domain profile. 478 529 IPR001005 -
Tan09g1842 996 Gene3D - 479 534 - -
Tan09g1842 996 Gene3D - 429 478 - -
Tan09g1842 996 MobiDBLite consensus disorder prediction 888 906 - -
Tan09g1842 996 CDD SANT 537 580 IPR001005 -
Tan09g1842 996 MobiDBLite consensus disorder prediction 869 887 - -
Tan09g1842 996 Pfam Myb-like DNA-binding domain 483 529 IPR001005 -
Tan09g1842 996 Pfam Myb-like DNA-binding domain 377 422 IPR001005 -
Tan09g1842 996 Pfam Myb-like DNA-binding domain 430 474 IPR001005 -
Tan09g1842 996 Pfam Myb-like DNA-binding domain 535 579 IPR001005 -
Tan09g1842 996 SUPERFAMILY Homeodomain-like 480 576 IPR009057 -
Tan09g1842 996 MobiDBLite consensus disorder prediction 645 671 - -
Tan09g1842 996 MobiDBLite consensus disorder prediction 1 28 - -
Tan09g1842 996 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 425 480 IPR017930 -
Tan09g1842 996 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 12 959 IPR051575 GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER)
Tan09g1842 996 SUPERFAMILY Homeodomain-like 409 480 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g0484 Tan-Chr9:45481686 Tan09g1842 Tan-Chr9:69769891 5.80E-11 dispersed
Tan09g1842 Tan-Chr9:69769891 Tan11g1045 Tan-Chr11:8236373 2.30E-09 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28378 PF00249 Myb_DNA-binding 9.60E-09 CL0123 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1842 K09422 - csv:101216287 1457.58