Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1842 ATGTCTCGCCGCAGCCACGACGACGGCGGTGACGAGAAGCTTTCCGCCGGCGAGGAAGACGATGAAGACGATGCCATTGATGACATGGAAGTCCTTCGGGGAGCCTGTAGGCTTGCTGGAGTTAATCCTGAGGAGTATATTAATCATCCGTCGTCGTCGCTTGCCGCCGGAGATGATTCCGATGAAGTAGATGATTTCGAACTTGTTCGGAATATTCGGAAGCAGTTCTCGATTGCGGACGATGAGCAGCCGTTGAGTATTCTCCCACCGGCGTCTCCGGACGAGGAGGAAGACGATTTCGAGACGCTTCGTCGGATTCAGCGGCGCTTTGGGGCGTATGAAACTGATATCTTGAGCAATAAACCCAATCAATCTTGTGACTTTGATGTGCCTCTGGAGATGGATTCTAACAACACAGCTATTGAGAGACAGACATACCCAGAGAGGTCATCTATGCTAGCCTTTGAAAAGGGAAGCTTGCCAAAGGCTGGATTGGCATTTATTGATGCCATCAAGAAGAATAGGTCCCAGCAGAAGTTTATTCGCAGTAAGATGATTCACCTTGAAGCTAGAATTGAGGAGACCAAAAAGCTCAGAAAACATTTCAAAATTCTCAAAGATTTCCAAGGTTCATGTAGAAGAAGAACAAGTTGTGCACTGTCTCAAACGATAGATCCTCGAGTTCAGTTAATATCAGCTGGAAAACCACAGGCTAAGGATTCATCAAAGAAGGACAAACGATTGTCTGCAATGTATTATGGCCCAGCTGAGAATTCTCATGTTGCATACTACAAAATGGCATTGACAAAGTTTCCACCTTCCGTAGATCGAAAAAGATGGTCCAATGTAGAAAGGGAGAATCTAGGGAAGGGAATACGACAACAATTTCAAGAGATGGTGCTTCAGATCTCGGTGGATCAAATTAGTGGGCTACAAGGATTTTTAGCAGATTCAGATGATCTGGATAACATTCTTGCATCAATAAAAGACCTTGACATTACTCCCGAAAAGATTAGGGAATTTTTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTATCTTCGGGGTCGCTCAGGGGCAGAATGTGAAGCAAGGTGGTTGAATTTTGAAGATCCCCTAATTAATCGGAATGCATGGACTACAAGTGAGGATAAGAATCTTTTGTTTACTATTCAACAGAAAGGGTTGAATAACTGGATTGACATAGCAGTTTCATTGGGTACAAACAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAACGCATCCATATTAAAGAGGGAGTGGACCAAAGATGAGGATGAGAAACTTCAATCTGCTGTTGCTATTCTTGGTGTGGGAGATTGGCAGGCTGTAGCTTCTACTTTAGAAGGACGAACTGGTCCACAGTGCTCTAATAGGTGGAAAAAATCCCTCGACCCAGCTAGGACAAAAAGAGGCTACTTCACCCCAGATGAAGACAGTCGCTTGAAAATTGCTGTACTGCTTTTTGGGCCTAAAAATTGGAACAAGAAAGCCGAATTTTTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTTCAATTGCTTAGATCCTTCCTTGAGAAGATGTAAATGGACAGAAGAGGAGGATTTAAGGCTAGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTGCCGTCACGTACAGATAATGAGTGCCGGAGGAGATGGAAGAAGTTGTTTCCCAATGAAGTTCCTTTGCTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGGGAATCAGAGCGTCCTGCTCTTGGTCCTACTGACTTTCGACCTATACCAAATACAAATTTATTATGTAATACTGATGATCCAAAACCTGCCCCGAAAAGAAATGTGAAAACGAGAAGGATGCCAGTGTCAAGGAAAAATGAAAAGAGTGCTACTGGTGATGCTGATGCTCCTAAGAAGAGGAAATCAAATAACCGGAGGAATCAAGCTGATGCAACTGCTCAGGGCGGTATTGCAAATAATGTCCCAGAGGAGATTAAATCTATAAAACCTCAAAGAAAACGAAATAGGCATGGAGCTTATACTCCTAAGAGGAAAGGGGTTCTGGAGCTAAGTTCTAACAGTGAAAGATGTGCTGAACAGAATTTGGACACTCGGAGCCTCGAGGTGCAGCTGAATGGTAAGGAATCCGAGATGACCAACAATGACTGTGCCGAGGCTGTTGATGAGAATGGTATGGAAGTATGTGAGAACAATGTTGCAGAGAAGCTTTCTAAAAGAGATGTATGCTGTTCAGAACAAGAAGGAAATCAGAACTCTACAGGATCTTCTGGAGTGTCGGTGTTGTCGGAAATGACTAATGACACGGACGAGTACAATCCCTTTATCCTTCCAGATACAGCACTGCTGGCTAGTAGTACTGCTGGGGATGATATTATGGTGAGGAATGGGGAGAGTGTTGCAGACAAAGATCTGGATGACAGTAACAGCTTCTCGTTACCGCTCAATTGCTTAGAACTCAGGACAACTGACAGTGAAGGTGTCAACAGTTATTCTGTTGGTGAAATTACAGACAAAGACGATAACATTTGCAAGCCCCAAGGCAGAAGGAAGAAAAATAGTAAAGGATCAAATGAGAGTCAGGGTTCTTTGGTGGTTTCTGGTCAACAAGGGGAGCTGGAGAGGTCGGGGACGAAGTCCCCTCGTCGTCATAATCAATCAAAGAAGAGAAAGCATAACACTATAAATACGAGTTCATTAGGAACACTGGAGGCAGTTGAAGAGGTCGATGACTGCACTCTCCTTGGCTTTCTGCAAAAAAGATTGAAGAGAACAACCACTCATGAAAAGAAAGTTGATAGCACTCTCCTAGAAGTTGATAATGATCCTACTATTGCCTCGCTCCTCGAGGGTAAATTGAAGAGAAAAAAGCATCTAGCGCCTAGTGGTGGAGGTTAA 2991 43.7 MSRRSHDDGGDEKLSAGEEDDEDDAIDDMEVLRGACRLAGVNPEEYINHPSSSLAAGDDSDEVDDFELVRNIRKQFSIADDEQPLSILPPASPDEEEDDFETLRRIQRRFGAYETDILSNKPNQSCDFDVPLEMDSNNTAIERQTYPERSSMLAFEKGSLPKAGLAFIDAIKKNRSQQKFIRSKMIHLEARIEETKKLRKHFKILKDFQGSCRRRTSCALSQTIDPRVQLISAGKPQAKDSSKKDKRLSAMYYGPAENSHVAYYKMALTKFPPSVDRKRWSNVERENLGKGIRQQFQEMVLQISVDQISGLQGFLADSDDLDNILASIKDLDITPEKIREFLPKVNWDKLASMYLRGRSGAECEARWLNFEDPLINRNAWTTSEDKNLLFTIQQKGLNNWIDIAVSLGTNRTPFQCLSRYQRSLNASILKREWTKDEDEKLQSAVAILGVGDWQAVASTLEGRTGPQCSNRWKKSLDPARTKRGYFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCKWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNECRRRWKKLFPNEVPLLQEARKIQKAALISNFVDRESERPALGPTDFRPIPNTNLLCNTDDPKPAPKRNVKTRRMPVSRKNEKSATGDADAPKKRKSNNRRNQADATAQGGIANNVPEEIKSIKPQRKRNRHGAYTPKRKGVLELSSNSERCAEQNLDTRSLEVQLNGKESEMTNNDCAEAVDENGMEVCENNVAEKLSKRDVCCSEQEGNQNSTGSSGVSVLSEMTNDTDEYNPFILPDTALLASSTAGDDIMVRNGESVADKDLDDSNSFSLPLNCLELRTTDSEGVNSYSVGEITDKDDNICKPQGRRKKNSKGSNESQGSLVVSGQQGELERSGTKSPRRHNQSKKRKHNTINTSSLGTLEAVEEVDDCTLLGFLQKRLKRTTTHEKKVDSTLLEVDNDPTIASLLEGKLKRKKHLAPSGGG 996
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 69769891 69782949 + Tan0015669.1 Tan09g1842 764185

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1842 996 MobiDBLite consensus disorder prediction 861 927 - -
Tan09g1842 996 Gene3D - 374 424 - -
Tan09g1842 996 MobiDBLite consensus disorder prediction 14 28 - -
Tan09g1842 996 MobiDBLite consensus disorder prediction 608 725 - -
Tan09g1842 996 ProSiteProfiles Myb-like domain profile. 372 424 IPR001005 -
Tan09g1842 996 CDD SANT 486 527 IPR001005 -
Tan09g1842 996 SUPERFAMILY Homeodomain-like 353 420 IPR009057 -
Tan09g1842 996 ProSiteProfiles Myb-like domain profile. 425 476 IPR001005 -
Tan09g1842 996 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 530 584 IPR017930 -
Tan09g1842 996 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 482 529 IPR017930 -
Tan09g1842 996 ProSiteProfiles Myb-like domain profile. 530 580 IPR001005 -
Tan09g1842 996 SMART sant 276 373 IPR001005 -
Tan09g1842 996 SMART sant 482 531 IPR001005 -
Tan09g1842 996 SMART sant 534 582 IPR001005 -
Tan09g1842 996 SMART sant 376 426 IPR001005 -
Tan09g1842 996 SMART sant 429 478 IPR001005 -
Tan09g1842 996 CDD SANT 432 476 IPR001005 -
Tan09g1842 996 Gene3D - 537 583 - -
Tan09g1842 996 ProSiteProfiles Myb-like domain profile. 478 529 IPR001005 -
Tan09g1842 996 Gene3D - 479 534 - -
Tan09g1842 996 Gene3D - 429 478 - -
Tan09g1842 996 MobiDBLite consensus disorder prediction 888 906 - -
Tan09g1842 996 CDD SANT 537 580 IPR001005 -
Tan09g1842 996 MobiDBLite consensus disorder prediction 869 887 - -
Tan09g1842 996 Pfam Myb-like DNA-binding domain 483 529 IPR001005 -
Tan09g1842 996 Pfam Myb-like DNA-binding domain 377 422 IPR001005 -
Tan09g1842 996 Pfam Myb-like DNA-binding domain 430 474 IPR001005 -
Tan09g1842 996 Pfam Myb-like DNA-binding domain 535 579 IPR001005 -
Tan09g1842 996 SUPERFAMILY Homeodomain-like 480 576 IPR009057 -
Tan09g1842 996 MobiDBLite consensus disorder prediction 645 671 - -
Tan09g1842 996 MobiDBLite consensus disorder prediction 1 28 - -
Tan09g1842 996 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 425 480 IPR017930 -
Tan09g1842 996 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 12 959 IPR051575 GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER)
Tan09g1842 996 SUPERFAMILY Homeodomain-like 409 480 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1842 K09422 - - csv:101216287 1457.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g0484 Tan-Chr9:45481686 Tan09g1842 Tan-Chr9:69769891 5.80E-11 dispersed
Tan09g1842 Tan-Chr9:69769891 Tan11g1045 Tan-Chr11:8236373 2.30E-09 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan09g0484 . 1 830 MYB-Related Transcription Factor Family AT1G09770 77.6 0.0e+00 1213.0
Tan09g0485 . 1 754 MYB-Related Transcription Factor Family AT1G09770 75.3 6.9e-310 1060.4
Tan09g1842 . 159 625 MYB-Related Transcription Factor Family AT3G18100 55.6 2.6e-150 530.0
Tan09g1842 . 159 625 MYB-Related Transcription Factor Family AT3G18100 55.6 2.6e-150 530.0
Tan09g0484 . 1 830 MYB-Related Transcription Factor Family AT1G09770 77.6 0.0e+00 1213.0
Tan09g0485 . 1 754 MYB-Related Transcription Factor Family AT1G09770 75.3 6.9e-310 1060.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28378 PF00249 Myb_DNA-binding 9.60E-09 CL0123 Tan TF