Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1882 ATGGCGACGCCGTTGACAGGGCTACAACACCGGGACGGTGGCGGAGGAGTGGCTTTCTTGGCTAATTCTGTAAATAAAATGGATTCCGCGTCATCTCCGTCCTCGCCGAATGATTGTTTGAGGACCTCCGAGCCTCAGTCTCCGATTCTTATTTTCCTTTTCTTCCATAAAGCAATTCGTAATGAGCTCGATACGCTTCACCGGCTAGCCATGGCGTTTGCCACCGGCCAGAGAGCAGATATTCGCCCACTATTTGAACGATACCATTTTTTGAGATCGATTTACAAGCACCACTCCAATGCTGAAGACGAGGTAATTTTTCCTGCACTTGATATTCGTGTGAAGAATGTGGCACAGACCTATTCTCTTGAACACAAGGGTGAAAGCAATCTGTTTGACCATCTTTTTGAGCTTCTTAATTCTAATACACAAAATGATGAAAGCTTCCCAAGGGAGTTAGCGTCCTGCACTGGTGCCCTGAAGACTTCTGTAAGCCAGCACATGGCTAAGGAAGAAGAGCAGGTATTTCCCTTGCTTATAGAAAAGTTCTCCTTGGAAGAGCAGGCATCTCTCGTTTGGCAGTTCTTTTGCAGTATTCCTGTGTACATGATGGCTCAATTTCTGCCTTGGCTTTCATCATCTGTTTCACCTGATGAATTTCAGGATCTACAGAAATGTTTAAACAAGGTAGTCCCCGAGGAGAAGCTTCTCCAACAGGTCATATTTACTTGGACGGAAGCGAGAAGCTGTGACAATGTATCAAAAAATGGCTTTGATGATTCTCCAGTTGGATATCATACAGATCCTACTACTAATACATCACATCATCAAACAGAAAAAGTAAGTTGTGCTTGTGAATTGACCAGCCATGGGAAAAGAAAACATTTGGAGTCAAGTTCTGATACATCAGATTATGTGGTAACTCATCCGATCAATGAGATACTGTTCTGGCATAATGCCATCAAAAGAGAGTTGAATGACATAGCCGAGGAAGCTAGGAAGATACAACTTTCTGGGAACTTTAGTAATCTATCAACTTTTAACGAGAGGTTGCAATTCATTGCAGAAGTTTGCATTTTTCATAGTATTGCCGAGGACAAGGTAATCTTTCCTGCAGTAGATGGAGAATTTTCTTTTCTCCAGGAACATGCTGAAGAAGAAAGTCAATTCAATGAGTTTAGGTGCCTGATTGAAAATATTCAAAGTGCAGGGGCTAGTTCTACTTCAAGAGCTGAATTTTACGTGAAGTTGTGTTCTCATGCTGATCAAATAATGGATACCATTAAGAGACACTTTCATAATGAAGAAGTTCAGGTTCTTCCACTTGCTAGAAAGCACTTCAGTTTCAAGAGGCAACGGGAACTATTGTATCAAAGCTTGTGCATGATGCCTTTGAAATTGATTGAACGTGTATTGCCATGGCTGGTAGGATCATTGAAAGAAGATGAAGCTAGAGATCTTCTCAAGAACATGCAGTTGGCAGCTCCAGCTAAAGATACTGCTCTGGTGACTCTCTTTTCTGGTTGGGCTTGCAAGGCCCGTAATAATGGTTTGTGCCTGTCTTCAAGAGAAGTTGGCTGTTGTGCAGTTAAAAGGCTCACTGACATTGAAGAAGACATTGTTCAATCATCTTGTTCTTGTGCCCCTGCATTAATTGCAAGGGAAGGTCTAAAATCAGATCCCGAAACCAATGTTAATGCTAAGAGGCCAGCCATACGGAATGTTCCTATGCCATGCAAAATCTGTGATGGCCGTATTGCTTCAGAGACTGTTAATGTCCAGCAGCAGTGTTGTAGTGATCAGTCCTGCCGAGTTCCAGCTTTAGGAGTAAACAGCAAGAATCTGGGGTTAAGTTCTATTTTCACATCCAAGTCTATGCGATCCTTATCTCCCAGCTCTTGTGCACCATCTCTCAATTCCAGCCTTTTTTCATGGGAAACGGATAGTGCCTCTTCTGATGTTGGATCTGCAGGACGTCCCATTGATACTATTTTTAAATTTCACAAAGCTATACGCAAAGACCTGGAATATTTAGATGTTGAATCTGGAAAACTTAGTGATTGTGATGGAACATTTCTCCGGCAATTTATTGGAAGATTTCGCCTTCTATGGGGGTTATATAGAGCTCATAGTAATGCTGAAGATGATATTGTATTTCCTGCACTGGAATCCAAAGAGACATTGCACAATGTAAGTCACTCGTATACACTAGATCATAAGCAGGAGGAAAAATTATTTGAGGACATTTCATGTGTTCTCTCTGAGATTTCAATCCTCCACGAAAGTCTGCATGAAGTTCCGTTGGATGAGAGTTTTTCTAGGAGTGATGTTGGCTCTGTTAATGTGGTGGGGAAGGATTGTAATAGAAAGTACAACGAGCTTGCTACAAAGCTTCAAGGAATGTGCAAATCTATAAGAGTTACCCTGGATCAGCATATTTTTAGGGAAGAACTTGAACTTTGGCCATTGTTTGGGAAACACTTCTCCGTGGAGGAGCAAGACAAAATAGTTGGCCGTATTATTGGGACCACAGGTGCTGAAGTTCTCCAGTCAATGTTGCCATGGGTAACATCTGCACTTACTCAGGACGAACAGAATACTATGATGGATACATGGAAGCAGGCCACAAAAAACACCATGTTCAATGAATGGCTCAATGAATGTTGGAGAGGGACTGCTTCATCTACTTTAAATGGTGAAACATCAGAAGCTAGTGTTGCTGAAAAAGATTCTGGGCTTATTGAGAGTTTGGATCAGAATGATCAAATGTTCAAGCCTGGTTGGAAAGATATTTTTCGCATGAACCAAAATGAACTTGAATCAGAAATCAGGAAGGTTTATCAGGACTCGACTCTTGATCCAAGGAGAAAAGCATATCTCGTGCAGAATCTTATGACCAGTCGCTGGATTGCTGCACAGCAGAAATTACCTCAAGCAAATGTAGAAGATAATTCCAATGGTGAAAATGTAGCAGGACGAACACCATCTTTTCGCTGTGCCGAGAAAAAGGTGTTTGGGTGTGAACATTACAAAAGAAACTGCAAGCTTCTTGCTGCTTGCTGTGGAAAGTTATTTACTTGTCGATTCTGTCATGACAATGTCAGCGATCACTCAATGGACAGGAAAGCAACATCAGAGATGATGTGTATGAACTGTCTAACAATTCAACCAGTTGGGCCAATATGCACAACACCTTCTTGCAATGGATTGTCAATGGCGAAATACTATTGCAATATTTGCAAATTTTTTGATGATGAAAGGACTGTGTATCATTGCCCATTTTGTAACTTATGCCGTGTCGGGAAGGGTCTTGGAATTGATTTTTTCCATTGCATGATTTGCAATTGTTGCCTTGGGATAAAGCTGGAGAGTCATAAGTGCCTGGAGAAAAGTTTAGAGACGAATTGTCCCATCTGTTGTGATTTCTTATTTACATCCAGTGCAACAGTCAGACCACTACCCTGTGGTCATTACATGCATTCAGCTTGCTTTCAGGCATACACTTGCAGTCATTATACCTGTCCTATTTGCAGCAAGTCCTTGGGAGATATGGCGGTTTATTTTGGCATGCTTGACGCCTTGTTGGCTGCTGAGGAATTGCCAGAAGAGTACAGGGATCGTTGCCAGGACATATTGTGCAATGACTGTGAGCGGAAAGGCGCATCAAGGTTCCATTGGCTATATCATAAATGTGGGTTTTGTGGATCATACAACACCCGAGTAATCAAAAATGATACCACAACCAGTACCACATATGCAGACTGCCCCTCGTCCAATCAATGA 3783 41.92 MATPLTGLQHRDGGGGVAFLANSVNKMDSASSPSSPNDCLRTSEPQSPILIFLFFHKAIRNELDTLHRLAMAFATGQRADIRPLFERYHFLRSIYKHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNSNTQNDESFPRELASCTGALKTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFFCSIPVYMMAQFLPWLSSSVSPDEFQDLQKCLNKVVPEEKLLQQVIFTWTEARSCDNVSKNGFDDSPVGYHTDPTTNTSHHQTEKVSCACELTSHGKRKHLESSSDTSDYVVTHPINEILFWHNAIKRELNDIAEEARKIQLSGNFSNLSTFNERLQFIAEVCIFHSIAEDKVIFPAVDGEFSFLQEHAEEESQFNEFRCLIENIQSAGASSTSRAEFYVKLCSHADQIMDTIKRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLVGSLKEDEARDLLKNMQLAAPAKDTALVTLFSGWACKARNNGLCLSSREVGCCAVKRLTDIEEDIVQSSCSCAPALIAREGLKSDPETNVNAKRPAIRNVPMPCKICDGRIASETVNVQQQCCSDQSCRVPALGVNSKNLGLSSIFTSKSMRSLSPSSCAPSLNSSLFSWETDSASSDVGSAGRPIDTIFKFHKAIRKDLEYLDVESGKLSDCDGTFLRQFIGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISCVLSEISILHESLHEVPLDESFSRSDVGSVNVVGKDCNRKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNTMMDTWKQATKNTMFNEWLNECWRGTASSTLNGETSEASVAEKDSGLIESLDQNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPQANVEDNSNGENVAGRTPSFRCAEKKVFGCEHYKRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMNCLTIQPVGPICTTPSCNGLSMAKYYCNICKFFDDERTVYHCPFCNLCRVGKGLGIDFFHCMICNCCLGIKLESHKCLEKSLETNCPICCDFLFTSSATVRPLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRCQDILCNDCERKGASRFHWLYHKCGFCGSYNTRVIKNDTTTSTTYADCPSSNQ 1260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 70042500 70053148 + Tan0013759.1 Tan09g1882 764225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1882 1260 SUPERFAMILY RING/U-box 1135 1181 - -
Tan09g1882 1260 Pfam Ring finger domain 1135 1177 IPR001841 -
Tan09g1882 1260 Pfam CHY zinc finger 1007 1075 IPR008913 GO:0008270(InterPro)
Tan09g1882 1260 SMART ring_2 1136 1177 IPR001841 -
Tan09g1882 1260 Gene3D nmb1532 protein domain like 46 196 - -
Tan09g1882 1260 Gene3D nmb1532 protein domain like 312 459 - -
Tan09g1882 1260 Pfam Hemerythrin HHE cation binding domain 660 822 IPR012312 -
Tan09g1882 1260 Pfam Hemerythrin HHE cation binding domain 52 179 IPR012312 -
Tan09g1882 1260 Pfam Hemerythrin HHE cation binding domain 310 443 IPR012312 -
Tan09g1882 1260 Pfam Zinc-ribbon 1183 1240 IPR039512 -
Tan09g1882 1260 CDD RING-H2_Pirh2-like 1135 1178 - -
Tan09g1882 1260 CDD Hr-like 51 177 - -
Tan09g1882 1260 FunFam Zinc finger protein-related isoform 1 1131 1180 - -
Tan09g1882 1260 SUPERFAMILY Zinc hairpin stack 1073 1129 IPR037275 -
Tan09g1882 1260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1129 1180 IPR013083 -
Tan09g1882 1260 Gene3D - 1207 1249 - -
Tan09g1882 1260 ProSiteProfiles Zinc finger RING-type profile. 1136 1178 IPR001841 -
Tan09g1882 1260 CDD Hr-like 313 441 - -
Tan09g1882 1260 ProSiteProfiles Zinc finger CTCHY-type profile. 1072 1135 IPR017921 -
Tan09g1882 1260 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 695 1242 - -
Tan09g1882 1260 Gene3D nmb1532 protein domain like 655 887 - -
Tan09g1882 1260 SUPERFAMILY CHY zinc finger-like 1001 1063 IPR037274 GO:0008270(InterPro)
Tan09g1882 1260 CDD Hr-like 662 822 - -
Tan09g1882 1260 ProSiteProfiles Zinc finger CHY-type profile. 1000 1069 IPR008913 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0832 Tan-Chr4:7030918 Tan09g1882 Tan-Chr9:70042500 0.00E+00 dispersed
Tan04g0833 Tan-Chr4:7031172 Tan09g1882 Tan-Chr9:70042500 0.00E+00 dispersed
Tan09g1882 Tan-Chr9:70042500 Tan10g0960 Tan-Chr10:8379851 3.60E-44 dispersed
Tan09g2172 Tan-Chr9:71787192 Tan09g1882 Tan-Chr9:70042500 4.30E-231 transposed
Tan04g0826 Tan-Chr4:7030918 Tan09g1882 Tan-Chr9:70042500 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1882 K16276 - csv:101215023 2421.74