Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1896 ATGGATCCTCCTCATCACTTCAAGCCTTCTTTCTCCTTCCCTGATTTCATCGATTCTAATTTCGACCTAATTTCTGCTTCCAACCCAGTTGTTTTAGACAACCCACCTCTCAATTTCACTAACTTTTTCCCCTTTTCCAATGACTTGTTTTCACCTCATAACCAAAACCAAAACCCACCAGAATTATTTCCTCACAATTTGGGAGATAGCCAGATTTTGCAGCAACCTCCTCCCACTCCTAATCCCCCACTTTCTTCTCAATTTCATCACATGAAGATCAAGAGAAAATCCATGGATCTTTCACAAACCAGCTCTGGGATTTCCACTCCTCAAGTTTCTGAAACTGCCTTCTTCAACACAAAAAATAGCTCAGGAAAAGGGAAGAGATTGAAAACTATTGAGAAAGAAGAAGATAAATCAACTAGAGAAGTGGTTCATGTCAGAGCTAGAAGAGGCCAAGCCACTGATAGCCATAGTTTAGCTGAAAGGGTGAGAAGAGGAAAGATCAATGAAAGACTAAGATGCTTGAAAGACATTGTCCCAGGATGCTACAAGACCATGGGCATGGCTGTCATGTTGGATGAGATAATTAATTATGTCCAGTCTCTGCAGAATCAAGTGGAGTTTCTATCCATGAAACTAGCAGCAGCTAGTTCTTTTTATGACTTCAATTCGGAGGCAGATGTCATATCAAAATTACAGAGGGCAAAGGCACATGAAGCAAAAGAATTAGAGAGATTGATGAGAGAAGGATATGGAGGAGTAGCTTGCTTCCACTCAACTTTGCCTCTTTGA 795 40.75 MDPPHHFKPSFSFPDFIDSNFDLISASNPVVLDNPPLNFTNFFPFSNDLFSPHNQNQNPPELFPHNLGDSQILQQPPPTPNPPLSSQFHHMKIKRKSMDLSQTSSGISTPQVSETAFFNTKNSSGKGKRLKTIEKEEDKSTREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLAAASSFYDFNSEADVISKLQRAKAHEAKELERLMREGYGGVACFHSTLPL 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 70106179 70107818 + Tan0002380.1 Tan09g1896 764239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1896 264 FunFam transcription factor BEE 3-like 150 221 - -
Tan09g1896 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 203 IPR011598 GO:0046983(InterPro)
Tan09g1896 264 MobiDBLite consensus disorder prediction 50 74 - -
Tan09g1896 264 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 102 239 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Tan09g1896 264 SMART finulus 159 209 IPR011598 GO:0046983(InterPro)
Tan09g1896 264 CDD bHLH_AtBPE_like 143 228 - -
Tan09g1896 264 Pfam Helix-loop-helix DNA-binding domain 157 204 IPR011598 GO:0046983(InterPro)
Tan09g1896 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 221 IPR036638 GO:0046983(InterPro)
Tan09g1896 264 Coils Coil 230 250 - -
Tan09g1896 264 MobiDBLite consensus disorder prediction 50 87 - -
Tan09g1896 264 Gene3D - 149 221 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2268 Tan-Chr5:73960172 Tan09g1896 Tan-Chr9:70106179 4.70E-34 dispersed
Tan09g1896 Tan-Chr9:70106179 Tan11g1640 Tan-Chr11:15877923 2.60E-29 dispersed
Tan04g2023 Tan-Chr4:72351644 Tan09g1896 Tan-Chr9:70106179 9.60E-34 transposed
Tan05g2267 Tan-Chr5:73960172 Tan09g1896 Tan-Chr9:70106179 2.70E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28380 PF00010 HLH 4.50E-05 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1896 - - - 0.0