Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1939 ATGACTTGGAGGAGAGTGTTGAAGTCGGTGCAGGCACTTTTGGCCCACGGTTCACTCTTCTGTTTCACGCTCTTGCTCGTTCTCAAGCTCGATCATTTCGTCTCCCACAGTTGGTGGGTTATTTTTTTCCCACTTTGGGTGTTTCATGTGGTTGTTGCTCGAGGAAGGTTCTCATTACCTGCCCCATCTCTTCCTCATAATCGTCATTGGGCACCGTGCCATGCTGTTGTTGCGACACCTTTGCTTGTAGCATTTGAATTACTTCTTTGTATATACCTCGAGAGCCTATCTGTTTATGGGTTTGCTGCTGTGAATTTGAAGATTGTCTTTCTACCGTTGCTGGCATTTGAAATCATTATTTTAATAGATAATTTCAGAATGTGTAGGTCACTAATGCCTGGTGACGATGAAAGCATGAGTGATGAGGCAATATGGGAGACTCTTCCTCACTTTTGGGTTGCCATTTCAATGGTCTTCTTTGTTGCTGCTACAGTATTTACTCTACTGAAGCTAAGTGGGAATGTTGGTGCTCTTGGCTGGTGGGACTTATTTATTAATTTTGGCATTGCCGAGTGCTTTGCCTTTCTTGTCTGTACAAAGTGGTCTAATCCTGCTATTCATAGAAATATTCAAACAAGAGAAAGTTGTTCATCATCAGCAGTAGTTAGATATCTAGATTGGAACAGTGGTCTAATAGTTTATCCAGAGCAGGATCAGCATCAGGACAGAATGTGTGGACTTCAAGACATTGGAGGCCATATCATGAAAATTCCCATAATTGTTTTTCAAGTCCTACTCTGCATGTATTTAGAGGGAACACCTGTAGGTGCGAAAAATATACCACTTCCCGTCCTTTTCTCGCCTCTTTTTATACTGCAAGGTGCTGCTGTTATTTATGCTGCATCTAGGTTGTTAGAGAAAGTTGTACTTCTCTTAAGAGGTGGATCTGGCACTGCATTGTATTTCAGTTTTTCTGCTAGGGCTCATGCCTGCTTGGAGTTCTTTCATCATGGTTCAAGGCTATTGGGGTGGTGGTCAATTGATGAAGGCAGTCGAGAGGAGCAGGCACGATTGTACCATGAGGGTGCCTCTGGGTACAATACTTTTAGTGGATATCCTCCGGAGATTGTGAAGAAGATGCCCAAGAAAGATCTTGCTGAGGAGGTCTGGCGCCTTCAAGCTGCCCTTGGGGAGCAGACAGAAATCACCAAATACAGTCAACAGGAATATGAAAGACTTCAAAATGAAAAGGTGTTATGTCGGGTTTGTTTCGAGGGAGAAATTAGTGTGGTTCTTCTTCCGTGTAGGCATCGCGTATTATGCAGTTCCTGCTGTGAGAAGTGTAAAAAGTGCCCAATATGTCGTGTCTCTATCGAAGAACGGTTACCGGTATACGATGTTTAG 1404 43.38 MTWRRVLKSVQALLAHGSLFCFTLLLVLKLDHFVSHSWWVIFFPLWVFHVVVARGRFSLPAPSLPHNRHWAPCHAVVATPLLVAFELLLCIYLESLSVYGFAAVNLKIVFLPLLAFEIIILIDNFRMCRSLMPGDDESMSDEAIWETLPHFWVAISMVFFVAATVFTLLKLSGNVGALGWWDLFINFGIAECFAFLVCTKWSNPAIHRNIQTRESCSSSAVVRYLDWNSGLIVYPEQDQHQDRMCGLQDIGGHIMKIPIIVFQVLLCMYLEGTPVGAKNIPLPVLFSPLFILQGAAVIYAASRLLEKVVLLLRGGSGTALYFSFSARAHACLEFFHHGSRLLGWWSIDEGSREEQARLYHEGASGYNTFSGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEYERLQNEKVLCRVCFEGEISVVLLPCRHRVLCSSCCEKCKKCPICRVSIEERLPVYDV 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 70362240 70370307 - Tan0006350.1 Tan09g1939 764282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1939 467 FunFam Kinesin-like protein KIN-7D, mitochondrial 397 465 - -
Tan09g1939 467 Pfam Zinc finger, C3HC4 type (RING finger) 417 460 - -
Tan09g1939 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 465 IPR013083 -
Tan09g1939 467 ProSiteProfiles Zinc finger RING-type profile. 420 455 IPR001841 -
Tan09g1939 467 SUPERFAMILY RING/U-box 411 462 - -
Tan09g1939 467 Pfam Transmembrane Fragile-X-F protein 28 292 IPR019396 -
Tan09g1939 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 467 - -
Tan09g1939 467 SMART ring_2 420 454 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g1939 Tan-Chr9:70362240 Tan11g1944 Tan-Chr11:30635983 1.40E-184 dispersed
Tan09g1939 Tan-Chr9:70362240 Tan09g1940 Tan-Chr9:70362240 2.10E-260 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1939 - - - 0.0