Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1940 ATGACTTGGAGGAGAGTGTTGAAGTCGGTGCAGGCACTTTTGGCCCACGGTTCACTCTTCTGTTTCACGCTCTTGCTCGTTCTCAAGCTCGATCATTTCGTCTCCCACAGTTGGTGGGTTATTTTTTTCCCACTTTGGGTGTTTCATGTGGTTGTTGCTCGAGGAAGGTTCTCATTACCTGCCCCATCTCTTCCTCATAATCGTCATTGGGCACCGTGCCATGCTGTTGTTGCGACACCTTTGCTTGTAGCATTTGAATTACTTCTTTGTATATACCTCGAGAGCCTATCTGTTTATGGGTTTGCTGCTGTGAATTTGAAGATTGTCTTTCTACCGTTGCTGGCATTTGAAATCATTATTTTAATAGATAATTTCAGAATGTGTAGGTCACTAATGCCTGGTGACGATGAAAGCATGAGTGATGAGGCAATATGGGAGACTCTTCCTCACTTTTGGGTTGCCATTTCAATGGTCTTCTTTGTTGCTGCTACAGTATTTACTCTACTGAAGCTAAGTGGGAATGTTGGTGCTCTTGGCTGGTGGGACTTATTTATTAATTTTGGCATTGCCGAGTGCTTTGCCTTTCTTGTCTGTACAAAGTGGTCTAATCCTGCTATTCATAGAAATATTCAAACAAGAGAAAGTTGTTCATCATCAGCAGTAGTTAGATATCTAGATTGGAACAGTGGTCTAATAGTTTATCCAGAGCAGGATCAGCATCAGGACAGAATGTGTGGACTTCAAGACATTGGAGGCCATATCATGAAAATTCCCATAATTGTTTTTCAAGTCCTACTCTGCATGTATTTAGAGGGAACACCTGTAGGTGCGAAAAATATACCACTTCCCGTCCTTTTCTCGCCTCTTTTTATACTGCAAGGTGCTGCTGTTATTTATGCTGCATCTAGGTTGTTAGAGAAAGTTGTACTTCTCTTAAGAGGTGGATCTGGCACTGCATTGTATTTCAGTTTTTCTGCTAGGGCTCATGCCTGCTTGGAGTTCTTTCATCATGGTTCAAGGCTATTGGGGTGGTGGTCAATTGATGAAGGCAGTCGAGAGGAGCAGGCACGATTGTACCATGAGGGTGCCTCTGGGTACAATACTTTTAGTGGATATCCTCCGGAGATTGTGAAGAAGATGCCCAAGAAAGATCTTGCTGAGGAGGTCTGGCGCCTTCAAGCTGCCCTTGGGGAGCAGACAGAAATCACCAAATACAGTCAACAGGAATATGAAAGACTTCAAAATGAAAAGGTGTTATGTCGGGTTTGTTTCGAGGGAGAAATTAGTGTGGTTCTTCTTCCGTGTAGGCATCGCGTATTATGCAGGTATATCGTACCCTACCTTATATCATATATTTACCTCTTCAAGTTTCACCAACACTTGTGA 1386 43.0 MTWRRVLKSVQALLAHGSLFCFTLLLVLKLDHFVSHSWWVIFFPLWVFHVVVARGRFSLPAPSLPHNRHWAPCHAVVATPLLVAFELLLCIYLESLSVYGFAAVNLKIVFLPLLAFEIIILIDNFRMCRSLMPGDDESMSDEAIWETLPHFWVAISMVFFVAATVFTLLKLSGNVGALGWWDLFINFGIAECFAFLVCTKWSNPAIHRNIQTRESCSSSAVVRYLDWNSGLIVYPEQDQHQDRMCGLQDIGGHIMKIPIIVFQVLLCMYLEGTPVGAKNIPLPVLFSPLFILQGAAVIYAASRLLEKVVLLLRGGSGTALYFSFSARAHACLEFFHHGSRLLGWWSIDEGSREEQARLYHEGASGYNTFSGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEYERLQNEKVLCRVCFEGEISVVLLPCRHRVLCRYIVPYLISYIYLFKFHQHL 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 70362240 70370307 - Tan0006350.2 Tan09g1940 764283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1940 461 Pfam Transmembrane Fragile-X-F protein 28 292 IPR019396 -
Tan09g1940 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 444 IPR013083 -
Tan09g1940 461 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 445 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g1940 Tan-Chr9:70362240 Tan11g1944 Tan-Chr11:30635983 4.00E-171 dispersed
Tan09g1939 Tan-Chr9:70362240 Tan09g1940 Tan-Chr9:70362240 2.10E-260 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1940 - - - 0.0