Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1960 ATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCCTCGCTTCCAAAGGCGACTATGACTAAAATTATTAAAGAGATGTTGCCCCCTGATGTGCGTGTTGCAAGAGATGCCCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTATCATCCGAATCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAGCATGTGCTCAAGGCTCTCGAGGTGCTTGGTTTTAGTGAATACATTGAGGAAGTTTATGCTGCATATGAACAACACAGGCTGGAAACTATGAAAACTCTCCAGCAAGACTCGTTGAAAGGTGGAAAGTGGAGTAATGGAGCCGAGATGACCGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCAGAGGCACGTGCAAGAATGAATGGCAGTAACACTGCTCCGAAGCAACCGGAGCCAGAGCAAAGTTTAGAGAGCTAA 483 44.1 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMKTLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 70490188 70493603 - Tan0011146.1 Tan09g1960 764303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1960 160 SUPERFAMILY Histone-fold 12 146 IPR009072 GO:0046982(InterPro)
Tan09g1960 160 PANTHER PROTEIN DR1 HOMOLOG 1 158 IPR044255 -
Tan09g1960 160 Gene3D Histone, subunit A 4 149 IPR009072 GO:0046982(InterPro)
Tan09g1960 160 MobiDBLite consensus disorder prediction 137 160 - -
Tan09g1960 160 MobiDBLite consensus disorder prediction 144 160 - -
Tan09g1960 160 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Tan09g1960 160 FunFam Negative cofactor 2 beta 6 147 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g1960 Tan-Chr9:70490188 Tan09g1961 Tan-Chr9:70490188 3.30E-80 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28386 PF00808 CBFD_NFYB_HMF 2.90E-22 CL0012 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1960 K21751 - csv:101214627 297.36