Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1960 ATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCCTCGCTTCCAAAGGCGACTATGACTAAAATTATTAAAGAGATGTTGCCCCCTGATGTGCGTGTTGCAAGAGATGCCCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTATCATCCGAATCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAGCATGTGCTCAAGGCTCTCGAGGTGCTTGGTTTTAGTGAATACATTGAGGAAGTTTATGCTGCATATGAACAACACAGGCTGGAAACTATGAAAACTCTCCAGCAAGACTCGTTGAAAGGTGGAAAGTGGAGTAATGGAGCCGAGATGACCGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCAGAGGCACGTGCAAGAATGAATGGCAGTAACACTGCTCCGAAGCAACCGGAGCCAGAGCAAAGTTTAGAGAGCTAA 483 44.1 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMKTLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 70490188 70493603 - Tan0011146.1 Tan09g1960 764303

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1960 160 SUPERFAMILY Histone-fold 12 146 IPR009072 GO:0046982(InterPro)
Tan09g1960 160 PANTHER PROTEIN DR1 HOMOLOG 1 158 IPR044255 -
Tan09g1960 160 Gene3D Histone, subunit A 4 149 IPR009072 GO:0046982(InterPro)
Tan09g1960 160 MobiDBLite consensus disorder prediction 137 160 - -
Tan09g1960 160 MobiDBLite consensus disorder prediction 144 160 - -
Tan09g1960 160 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Tan09g1960 160 FunFam Negative cofactor 2 beta 6 147 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1960 K21751 - - csv:101214627 297.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g1960 Tan-Chr9:70490188 Tan09g1961 Tan-Chr9:70490188 3.30E-80 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan09g1961 . 1 149 CCAAT-DR1 Transcription Factor Family AT5G08190 84.6 1.7e-63 239.6
Tan09g1960 . 1 153 CCAAT-DR1 Transcription Factor Family AT5G08190 82.4 4.9e-63 238.0
Tan09g1961 . 1 151 CCAAT-DR1 Transcription Factor Family AT5G23090 83.4 1.2e-66 250.0
Tan09g1960 . 1 155 CCAAT-DR1 Transcription Factor Family AT5G23090 81.3 6.7e-65 244.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004258 4 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 0 3 2 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28386 PF00808 CBFD_NFYB_HMF 2.90E-22 CL0012 Tan TF