Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1961 ATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCCTCGCTTCCAAAGGCGACTATGACTAAAATTATTAAAGAGATGTTGCCCCCTGATGTGCGTGTTGCAAGAGATGCCCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTATCATCCGAATCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAGCATGTGCTCAAGGCTCTCGAGGTGCTTGGTTTTAGTGAATACATTGAGGAAGTTTATGCTGCATATGAACAACACAGGCTGGAAACTATGCAAGACTCGTTGAAAGGTGGAAAGTGGAGTAATGGAGCCGAGATGACCGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCAGAGGCACGTGCAAGAATGAATGGCAGTAACACTGCTCCGAAGCAACCGGAGCCAGAGCAAAGTTTAGAGAGCTAA 471 44.16 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 70490188 70493603 - Tan0011146.2 Tan09g1961 764304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1961 156 PANTHER PROTEIN DR1 HOMOLOG 1 154 IPR044255 -
Tan09g1961 156 SUPERFAMILY Histone-fold 12 142 IPR009072 GO:0046982(InterPro)
Tan09g1961 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Tan09g1961 156 MobiDBLite consensus disorder prediction 140 156 - -
Tan09g1961 156 FunFam Negative cofactor 2 beta 6 143 - -
Tan09g1961 156 Gene3D Histone, subunit A 4 145 IPR009072 GO:0046982(InterPro)
Tan09g1961 156 MobiDBLite consensus disorder prediction 134 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g1960 Tan-Chr9:70490188 Tan09g1961 Tan-Chr9:70490188 3.30E-80 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28387 PF00808 CBFD_NFYB_HMF 2.70E-22 CL0012 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1961 K21751 - csv:101214627 303.138