Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1996 ATGAAAATCCGGTCGGTGAAGCTCCGAGAAGCCCACAAGGCCGCCAGCAATGGCAAACCTTCGTTCTGCTCCGTTCTGTGGGATCAACAAGCCTACCATATTGTCACTGCTTCGTCTTCCGAATCCGCCATATCCATCCATGATTCTCTTCTTCCTTCCACTACTCCGAAGATCATTCATCATCACCGCGAAGGGGTCACCGCGCTGGCTCTTAGCCCCAATTCCACCTGCCTCGCTTCTGGATCCATGGATCGATCCGTCAAGCTCTACAAGTTTCCCGGTGGAGAATTTGAGACCAATATCACAAGATTCACGCTGCCAATACGCATCCTTGCATTTAATAAATCCGGAAGTCTCTTGGCTGCTGCTGGCGATGATGATGGCATTAAGCTAATTAACACGATCGATGGTTCAATTGCCAGAGTTCTGAAAGGACATAAAGGAGCCGTTACTGGGTTGGCGTTTGACCCCAATAGTGAATACATGGCATCGGTGGATTCAATTGGAACTGTAATTGTCTGGGAACTCCAATCTGGGAGTATAATACATAACCTTAAAGGGATAGCTCCTAGCACAGGTACGGAACCTTCCGTTATGAATGTTTTATGCTGGAGCCCTGACGGAGAGATGCTCGCAGTCCCAGGATTAAGAAATGATGTTGTGATGTATGATAGAGATACTGCTGAAAAGCTGTTTTCATTGAGGGGAGATCACACTCAACCTATTTGTTTCCTGTCATGGTCACCAAATGGCAAATACATGGCTACTTCTTCATTGGATAGGCAAATTCTGATATGGGATATTGATCAGAAGCTGGATATTGATAGACAGAAATTTGATGAGAGAATATGTTGCATGGCATGGAAGCCAATTGGCAATGCCTTGGCTGTTATTGACGTCATGGGTAAGTATGGGGTGTGGGAATCAGTTGTTCCATCTTCTATGAAACCTCCAACAGAAGATATCCCTAAATTGCAATCAAGGAATAGCAATGGCTTGCTCTTGTTTGATGAAGAGGATGAGGAGCCTAGTGCACATGGCAATTCGAGTGACCTTGGAGAAGATAGCCATTATGAATCTGAATTTCCTACTCGAAAAAGGTTGCGTAAACATTCAACAAATGAAGAAATCTTGGATGAGGCTGATAGTGAAGATTTTAGCTTGCCCCCAAAGTTGGAATCCCGTAAAATATCACATCGAGTTAAAAGGGATAAGCCAGATAATATTGATGAGGGAGCTATAAGCATTGCAACATATAGTAGATTGAAACTACAGGAGGCATTTCAACCGGGAGCTACTCCCTTGCAGCCAGGAAAGAAACGCTTTTTGTGTTACAATATGCTTGGAAGTATAACTACTTTTGAACACGATGGGTACTCCCACATAGAGATAGATTTTCATGACACTGGCAGTGGCCCACGAGTTCCTTCAATGAATGATCATTTTGGTTTTACGATGGCTGCACTGAATGAAAATGGTAGTGTCTTTGCAAACCCTTGTAAGGGTGAGAAGAATATGAGCACGCTAATGTATCGCCCGTTTGGTAGCTGGGCAAATAACAGTGAGTGGTCCATGAGATTTGATGGAGAAGAAGTTAAGGTTGTAGCAGTTGGTACCAGATGGGTGGCTGCATTTACAAGTCTTAATTATCTTCGCATCTTCACAGATGGTGGTTTACAGAAACATATTCTTTCGCTTGATGGACCAGTGGTGACTGCATCTGGCTTCAAGGATGAACTTGCATTTGTGACTCATTCTTCAACCTGTCTTCCCTCAAACGACCAGATGCTAGAGTTCAGAATATTAAATATTTCTAATGGAACACAGCTCTTAAGAGGACGTTTGTCATTAACTCCAGGCTCACATCTCGCATGGTTTGGATTTAGTGAAGAAGGAAAATTGAGTTCCTACGACTCCAAGGGTGTACTCAGAGTGTTTACAAGTCAATATGGTGGCAGTTGGGTACCATTATTCAGTGCCCATAAGGAGAGGAAGTCGGATGAAAATTATTGGGTGGTTGGGTTGAACGCAAACAAGTTGTTCTGCGTGATATGCAAGAATCCTGACTTATACCCACAGGTGACACCTAAACCAGTTCTTACTCTGCTAAGTCTTTCATTTCCTCTTGCACTCTCTGACCTGGGCGCCGAAGCACTTGAGAATGAATTTATGATGAATAATATGCATCTCACACAGATCCATGGGAGAATGGAGGAAATAGCATTACATGGGTTGTACGACACTACATTGGACGATGAGGCATTCAGTATTGAAGCCGCTCAAGACAGATGCATCTTAAGGCTCATTGCTTCCTGCTGCAACGGTGATAAGCTTGTTAGAGCTACCGAACTTGTAAAACTTTTGTCGCTGGAGAAATCAGTGAAGGGTGCAATTAAGCTGGTTACTGCTTTGAAGCTTCCTAACTTGGCGGAACGTTTCAATGCCATACTAGAGGAAAGGTTGCTTAATGAAACTAAAGGGACTGTGGAAACCACCCTTTCAAGACCCAACTGCAATGGATCTGTCTTACCAAATGCTGCAACCAGCAATACACTTAATTCTGCAGTAAAAGCCCAAAGTTCAGAAGTTACTCGTCCATCCTCACCCAAAGCCCCAATACTCTCTGCACCTTTGTTTACAAAGAAACTCAAGTCTGAAGGAGCAAAATTCAATTCTGAAAAAGCAGAAGATAAGCAAACTTCGACATCAAAAATGCAGAACACCAAGGTAACAGAAAATACTGGTGACAACAATGTAGCAGATGTGAAGAAAGCAGTGTCATTGAGTAAGGCAGAGTCCAACCTTGAAACTAATCAACATTTCAAGTCATCTAATAATCAGAAGGTGAAGCCAGGAACAATAAATCAAGTTCAATGTAGTCGCCCCTCGAATCCGTTCTTGAAGTCATCAATCAAGTAA 2919 43.13 MKIRSVKLREAHKAASNGKPSFCSVLWDQQAYHIVTASSSESAISIHDSLLPSTTPKIIHHHREGVTALALSPNSTCLASGSMDRSVKLYKFPGGEFETNITRFTLPIRILAFNKSGSLLAAAGDDDGIKLINTIDGSIARVLKGHKGAVTGLAFDPNSEYMASVDSIGTVIVWELQSGSIIHNLKGIAPSTGTEPSVMNVLCWSPDGEMLAVPGLRNDVVMYDRDTAEKLFSLRGDHTQPICFLSWSPNGKYMATSSLDRQILIWDIDQKLDIDRQKFDERICCMAWKPIGNALAVIDVMGKYGVWESVVPSSMKPPTEDIPKLQSRNSNGLLLFDEEDEEPSAHGNSSDLGEDSHYESEFPTRKRLRKHSTNEEILDEADSEDFSLPPKLESRKISHRVKRDKPDNIDEGAISIATYSRLKLQEAFQPGATPLQPGKKRFLCYNMLGSITTFEHDGYSHIEIDFHDTGSGPRVPSMNDHFGFTMAALNENGSVFANPCKGEKNMSTLMYRPFGSWANNSEWSMRFDGEEVKVVAVGTRWVAAFTSLNYLRIFTDGGLQKHILSLDGPVVTASGFKDELAFVTHSSTCLPSNDQMLEFRILNISNGTQLLRGRLSLTPGSHLAWFGFSEEGKLSSYDSKGVLRVFTSQYGGSWVPLFSAHKERKSDENYWVVGLNANKLFCVICKNPDLYPQVTPKPVLTLLSLSFPLALSDLGAEALENEFMMNNMHLTQIHGRMEEIALHGLYDTTLDDEAFSIEAAQDRCILRLIASCCNGDKLVRATELVKLLSLEKSVKGAIKLVTALKLPNLAERFNAILEERLLNETKGTVETTLSRPNCNGSVLPNAATSNTLNSAVKAQSSEVTRPSSPKAPILSAPLFTKKLKSEGAKFNSEKAEDKQTSTSKMQNTKVTENTGDNNVADVKKAVSLSKAESNLETNQHFKSSNNQKVKPGTINQVQCSRPSNPFLKSSIK 972
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 70675490 70680636 - Tan0018461.1 Tan09g1996 764339

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1996 972 MobiDBLite consensus disorder prediction 930 972 - -
Tan09g1996 972 SMART WD40_4 136 175 IPR001680 GO:0005515(InterPro)
Tan09g1996 972 SMART WD40_4 52 91 IPR001680 GO:0005515(InterPro)
Tan09g1996 972 SMART WD40_4 178 224 IPR001680 GO:0005515(InterPro)
Tan09g1996 972 SMART WD40_4 94 133 IPR001680 GO:0005515(InterPro)
Tan09g1996 972 SMART WD40_4 2 48 IPR001680 GO:0005515(InterPro)
Tan09g1996 972 SMART WD40_4 227 267 IPR001680 GO:0005515(InterPro)
Tan09g1996 972 FunFam Transducin family protein / WD-40 repeat family protein 196 323 - -
Tan09g1996 972 MobiDBLite consensus disorder prediction 854 972 - -
Tan09g1996 972 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 276 IPR001680 GO:0005515(InterPro)
Tan09g1996 972 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515(InterPro)
Tan09g1996 972 MobiDBLite consensus disorder prediction 901 920 - -
Tan09g1996 972 MobiDBLite consensus disorder prediction 340 391 - -
Tan09g1996 972 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 235 269 - -
Tan09g1996 972 Pfam DNA polymerase alpha-binding protein Ctf4, C-terminal domain 719 821 IPR048591 -
Tan09g1996 972 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 184 IPR001680 GO:0005515(InterPro)
Tan09g1996 972 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 143 180 - -
Tan09g1996 972 Pfam Minichromosome loss protein, Mcl1, middle region 426 709 IPR022100 -
Tan09g1996 972 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 950 - GO:0000278(PANTHER)|GO:0003682(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)|GO:0043596(PANTHER)
Tan09g1996 972 MobiDBLite consensus disorder prediction 854 868 - -
Tan09g1996 972 MobiDBLite consensus disorder prediction 886 900 - -
Tan09g1996 972 ProSitePatterns Trp-Asp (WD) repeats signature. 254 268 IPR019775 -
Tan09g1996 972 CDD WD40 62 297 - -
Tan09g1996 972 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 91 - -
Tan09g1996 972 SUPERFAMILY WD40 repeat-like 21 307 IPR036322 GO:0005515(InterPro)
Tan09g1996 972 MobiDBLite consensus disorder prediction 340 377 - -
Tan09g1996 972 Pfam WD domain, G-beta repeat 237 267 IPR001680 GO:0005515(InterPro)
Tan09g1996 972 Pfam WD domain, G-beta repeat 58 90 IPR001680 GO:0005515(InterPro)
Tan09g1996 972 Pfam WD domain, G-beta repeat 140 174 IPR001680 GO:0005515(InterPro)
Tan09g1996 972 Gene3D - 52 309 IPR015943 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1996 K11274 - - csv:101211738 1732.61
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g412 . . Bda06g00505 . . . . Bma12g00953 . . . Cma11g00234 . Car11g00211 Sed08g0309 . Cpe04g01438 Bhi02g00049 Tan09g1996 Cmetu02g0986 . Hepe09g0298 . . Cla06g01517 Cam06g1673 Cec06g1734 Cco06g1730 Clacu06g1639 Cmu06g1587 Cre06g2398 Cone11ag0342 . . . . . . . . Blo15g00350 . . Bpe07g00744 . . . . . Cmo11g00237 . . . . . . . . . . . . . . . . . . . . Lsi06g01383 Csa01g00325 Chy02g02416 Cme02g01799
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010498 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31