Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2004 ATGCAGGACATACACTCGATCGCCGGAGGAAGCCGCTTGTTCGGCGGTGACCGTCGCCTGAGGCCTCACCTTCATCACCACCAGAACCACCAAGCCTTGAAGTGCCCAAGGTGTGATTCTGTCAATACAAAGTTCTGTTATTACAATAACTATAATCTCTCTCAGCCCCGTCACTTCTGCAAAAGCTGCCGCCGATACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCCGTCGGTGGCGGCTGCCGTAAAACCAAACGCTCCTCCAAGTCCAAGTCCACCTCCGACGCAGCCGTGCCTCCCCCTCCACCACCGCCTCCCCTTCGCGAACGGAAATCCACCTCTCATTCCAGCAGCGAGAGCTCCAGCCTCACCGCAACAACTACAACCGCCGCCGCCGCTGCAGCGGCGGCGGCCACCGAGGCCGTCTCCGCTCCGTCTTCCAATTCGGCTTCGACTCTATTAAGCGTACAGGATTCGAAATTGTTCCCCGCTCCGAGTACAAACCCTAATTTCGAAACGGCGGCGGCGGCGGCTCCGATTTCGGACTGCGGAATTTTCGCGGAAATAGGAAGCTTCACGAGCTTGATCACGTCGTCGAACGAGACATTGCCGTTCGGATTCGGCAACATCGCCGACGTGACGCCGTTCGCGATGAATCATCCGTTTCAAAATCAATCAGCGAATCAATGGGCGCCACAGAGAATGATGAATGTTGCCGATGAACTGAAGATGCAGGAGATCACAGGCGGCGGGTACATGGATCAGACGGCTCACGTCGATCCATCAGGGCTGCAGAATAGCAGATCAAGCAACATTGGATTTGGACCGTTGGATTGGCAACCAAACGGAGATCATCAAGTTCTGTTTGATCTTCCCAACGCCGTTGATCAAGCATACTGGAGTCAAAATCAATGGAGTGATCAAGATCAGCCCAATCTGTACCTTCCGTAA 954 55.14 MQDIHSIAGGSRLFGGDRRLRPHLHHHQNHQALKCPRCDSVNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSKSKSTSDAAVPPPPPPPPLRERKSTSHSSSESSSLTATTTTAAAAAAAAATEAVSAPSSNSASTLLSVQDSKLFPAPSTNPNFETAAAAAPISDCGIFAEIGSFTSLITSSNETLPFGFGNIADVTPFAMNHPFQNQSANQWAPQRMMNVADELKMQEITGGGYMDQTAHVDPSGLQNSRSSNIGFGPLDWQPNGDHQVLFDLPNAVDQAYWSQNQWSDQDQPNLYLP 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 70757357 70759529 + Tan0012205.1 Tan09g2004 764347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2004 317 ProSitePatterns Zinc finger Dof-type signature. 35 71 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan09g2004 317 Pfam Dof domain, zinc finger 31 87 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan09g2004 317 ProSiteProfiles Zinc finger Dof-type profile. 33 87 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan09g2004 317 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 25 195 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g2004 317 MobiDBLite consensus disorder prediction 77 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1776 Tan-Chr3:73505418 Tan09g2004 Tan-Chr9:70757357 1.40E-29 dispersed
Tan04g2743 Tan-Chr4:86847069 Tan09g2004 Tan-Chr9:70757357 5.30E-25 dispersed
Tan05g3313 Tan-Chr5:85015573 Tan09g2004 Tan-Chr9:70757357 2.30E-24 dispersed
Tan05g3314 Tan-Chr5:85023427 Tan09g2004 Tan-Chr9:70757357 2.10E-26 dispersed
Tan09g2004 Tan-Chr9:70757357 Tan11g1178 Tan-Chr11:9728980 1.30E-27 dispersed
Tan09g2004 Tan-Chr9:70757357 Tan05g0289 Tan-Chr5:2176725 5.30E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28392 PF02701 zf-Dof 4.40E-33 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2004 - - - 0.0