Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2007 ATGGAGGAGACTGAGAGAGAAATCAGAATCAAGACCCTAACAGGAGAATTACTGACCGTCTCCATTTCCGGCAACAGAACAATTGAGGACCTCAAACTTCTACTCAGGCGGAACTTCCCCTCTGCAACCATTTCCCCCAATTTTCATCTCTTTTCTAAGGGTACTAAATTGAAACCGCAGAGTCAAATTAGTGCTTGTCGCATTGACAACGGCGAGTTTCTAGTTCTCATTCCATTTAATAAGAAGGAATCTTCCAAGTCCCTGATACGCGATCATTATGAAAAAGGGTCCAGTGTTTCGGGCGGAAGCTCAATTTCTCAATTCGCTGATTCTGCGTGGTCCGATATGGTGCAGGACTTATCGTACTTACATGACTGTTCTGTTAAAGGGAGAGAGAAGAATGGCCCTGAGCGTGAGAGAGAGAGTTCTGAAGTCGGAGGTGTGGATGCTGAGCTGGTGGCCACATATAGTGCTAGTCCTTCTGATTTGAAAGCAAAAGTCAAAAAGGGTTTTGTTTATAATGAATTGGAAGGGAATTTGGATGACGTTTTGAGGAACATGTTATCGTCTCCTACTGAGGGGTTTTTAAACGAACACACTAGTGAAAACTTTATTAAGTTTTTGGTGTCAGTGGATTGTTTATCAGACCCACGTAATGGGAAATGCATGTTGGCAAAACAAGCTAATTCACGTAGTGGTAACAAAAAAGCGCTAAATAGAACAGGTTCTTTTTCATGCCTATGTCCAGTATGGTTGAAGAAGATGATGAAGGCATTTGCTTTCTTAAATGTTTTCTCAACATTTCTTCAACTACGAGAGGAAATTATGACCGCAAGTCGGTTGGAGCAAGCAATGGACCTGCTGCAGAAACATGGAATTCCGATTCGTATGGAGGACATGAAACATCTCTCCCTTCTCTGTCCCAAGGCAGTACATTTTGCGAGTGGCAGTTTGGAAGATAGCTGTGGTGATACGCTTATCATTATTATTTATTTGACCGAACCAAATGGTCGATGGAAAGATGATAATACCGCATGTAAACCGTCTAAAGCACCAACGGATCTCACTCCACTGAAGAGACGGGAAAAATCCTTTAAATCTTACCTTTGGGAGGCTATTAATGGCCATATGCTTAGACATGGAAGCAGAAGTGACATATGTGTGCCTTTTTATTTGGAAGATTTAATCACGTCAAAAGAGTCTGCTGTGGATGCAAATGAAGCGAAGCGAGCAAAAAAAACTGACACGGCTTCTTTGAGTTCTCGATCAGACCGAATACGATGCCATGACACTTCGAAACTCTTACCTGAGAATATGGTTGAACATCTTGAGAAGGGTGTTGGATCTGATGGCCAGATTGTGCATGTCGAAGATATTGCGGCTAGAAAAGCTAATTATGTGGAAATTCCCGAGGAACTTTCTAATAATGTCATATCAGCACTCAAATGTATTGGAGTAGCAAAATTGTATAGTCATCAGGCACGGTCGATAGAAGCCTCCCTGGCTGGAAAGCATGTTGCTGTTGCTACAATGACATCAAGTGGAAAATCCCTTTGCTATAACTTGCCAGTTCTTGAATCAATGTCTCAAAATGTCTCATCATGTGCTCTTTACTTGTTTCCAACTAAGGCCTTAGCTCAAGATCAACTCAGAAGTTTGCTCGTCATGATGAAAGAATCTAATGATAACATTACCATCGGCATTTATGATGGTGATACATCACAGGCTGACCGGATTTTATTGCGTGATAATGCTAGGCTGTTAATCACAAATCCAGATATGCTACATCTATCAATCCTGCCACACCACAGACAATTTAGTCGGATATTATCAAATCTACGGTTTTTAGTCATTGATGAGGCTCATACTTATAAGGGAGCATTTGGATGTCATACTGCACTAATACTACGGAGACTTCGCCGGCTATGCTCTCATGTGTATGGAAGTGATCCTTCTTTTATATTCTGCACAGCAACTTCTGCAAATCCACGCCAACATTGTATGGAACTTGGAAATCTGTCAAGCTTAGAGCTGATTGAAAATGATGGAAGTCCGTCTGCCAGAAAACTTTTCATCCTCTGGAATCCTATTATGGCCTCAAAAATTTCTAAGAGAGGTGTTGATTCTCTGCAGAGTACAGAAAAGAATGTTAATTTCAGAAATCCAAGCCCAATTATGGACATTGCGAGGCTCTTTGCAGAAATGGTTCAGCATGGACTTCGCTGCATTGCTTTTTGTAAAACTCGTAAACTTTGTGAACTCGTTTTATGCTACACGCGTGAAATTCTTAAGGAGAGAGCACCCCATCTAGTTCAGTCTGTGTGTGCTTATCGTGCTGGATACACTGCTGAGGATAGGAGGAGAATTGAGAGTGACTTTTTTGGGGGAAACCTTTGTGGTGTTGCTGCGACAAATGCCCTTGAATTGGGTATTGATGTAGGGCATATTGATGCAACTCTGCATTTGGGCTTTCCTGGCAGTATTGCTAGCTTGTGGCAACAAGCAGGCAGGGCAGGTAGGAGAGAAAAGGCTTCTCTTTCTGTGTATGTAGCATTCGAAGGGCCTCTTGATCAATATTTCATGAAACACCCTGAAAAACTTTTTGGGAGCCCAATTGAGTGCTGCCATATTGATGCTGAAAACCAACAGGTTCTTGAACAGCATTTGCTATGTGCTGCATATGAACACCCAGTTTGTATGGTTTATGATCAGAATTTTTTTGGTCCTGGCTTAAACACTGCCCTAATGTCTCTAAAAAGTAGAGGAGGTTTGAATCCTGAGCCATCATGTGGTTCATCCAAAAGTATTTGGAACTATATTGGGCAAGAGAAAATGCCTTCGCGCTCAGTTAGTATCCGAGCCATTGAAGCAGAGAGATACAAAGTTGTAGATCAGCGCCAAAATGAAGTTCTTGAAGAGATTGAGGAAAGCAGGGCTTTCTTTCAGGTATATGAAGGTGCTGTTTATATGCATCAAGGACGAACTTATCTGGTCAAAAGCTTGAATTTGTCAACTATGCTTGCTTTATGTGAAGAAGCTGATCTAAAATATTACACAAAAACACGTGATTACACTGACATTCATGTTATTGGTGGTAATATGGCCTATCCAAGGAGATCTCCAAATATTTCGCTCTCAAAAACAACTGCACAAGCAAATGATTGCAGAGTTACCACCACTTGGTTTGGTTTCTATCGAATATGGAAAGGAAGTAATCAAATTTTTGACACAGTGGATCTCTCCCTTCCAAAATATTCGTATAACTCTCAGGCAGTCTGGATTCCAGTACCACAATCTATAAAAGAAGAGGTGAAAAGGAAAAACTATGACTTTCGTGCAGGCTTGCATGCTGCTTCACATGCTCTTCTGAATGTAGTGCCACTACGCATAATTTGCAACATGTCTGACTTGGCTCCTGAATGTGCAAATCCTCATGATACTCGCTATTTTCCAGAAAGAATTCTGTTGTATGATCAACATCCTGGAGGAACTGGTATGTCACTGCAGATTCAACCCGTATTCATAGAGCTGTTGAATGCTGCTTTAGAACTTCTCACCTCTTGCTGCTGCTTAGGAGAGGCCGGCTGCCCTAATTGTGTCCAAAGCCTCGCCTGTCACGAATACAATGAAGTTTTACACAAGGATGCAGCCAGTTTAATTATCAAGGGTGTTCTGGATGAAGAGAAAGCGTATGGCAGATGA 3702 41.63 MEETEREIRIKTLTGELLTVSISGNRTIEDLKLLLRRNFPSATISPNFHLFSKGTKLKPQSQISACRIDNGEFLVLIPFNKKESSKSLIRDHYEKGSSVSGGSSISQFADSAWSDMVQDLSYLHDCSVKGREKNGPERERESSEVGGVDAELVATYSASPSDLKAKVKKGFVYNELEGNLDDVLRNMLSSPTEGFLNEHTSENFIKFLVSVDCLSDPRNGKCMLAKQANSRSGNKKALNRTGSFSCLCPVWLKKMMKAFAFLNVFSTFLQLREEIMTASRLEQAMDLLQKHGIPIRMEDMKHLSLLCPKAVHFASGSLEDSCGDTLIIIIYLTEPNGRWKDDNTACKPSKAPTDLTPLKRREKSFKSYLWEAINGHMLRHGSRSDICVPFYLEDLITSKESAVDANEAKRAKKTDTASLSSRSDRIRCHDTSKLLPENMVEHLEKGVGSDGQIVHVEDIAARKANYVEIPEELSNNVISALKCIGVAKLYSHQARSIEASLAGKHVAVATMTSSGKSLCYNLPVLESMSQNVSSCALYLFPTKALAQDQLRSLLVMMKESNDNITIGIYDGDTSQADRILLRDNARLLITNPDMLHLSILPHHRQFSRILSNLRFLVIDEAHTYKGAFGCHTALILRRLRRLCSHVYGSDPSFIFCTATSANPRQHCMELGNLSSLELIENDGSPSARKLFILWNPIMASKISKRGVDSLQSTEKNVNFRNPSPIMDIARLFAEMVQHGLRCIAFCKTRKLCELVLCYTREILKERAPHLVQSVCAYRAGYTAEDRRRIESDFFGGNLCGVAATNALELGIDVGHIDATLHLGFPGSIASLWQQAGRAGRREKASLSVYVAFEGPLDQYFMKHPEKLFGSPIECCHIDAENQQVLEQHLLCAAYEHPVCMVYDQNFFGPGLNTALMSLKSRGGLNPEPSCGSSKSIWNYIGQEKMPSRSVSIRAIEAERYKVVDQRQNEVLEEIEESRAFFQVYEGAVYMHQGRTYLVKSLNLSTMLALCEEADLKYYTKTRDYTDIHVIGGNMAYPRRSPNISLSKTTAQANDCRVTTTWFGFYRIWKGSNQIFDTVDLSLPKYSYNSQAVWIPVPQSIKEEVKRKNYDFRAGLHAASHALLNVVPLRIICNMSDLAPECANPHDTRYFPERILLYDQHPGGTGMSLQIQPVFIELLNAALELLTSCCCLGEAGCPNCVQSLACHEYNEVLHKDAASLIIKGVLDEEKAYGR 1233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 70771414 70783806 + Tan0018490.1 Tan09g2007 764350

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2007 1233 SUPERFAMILY Ubiquitin-like 4 77 IPR029071 -
Tan09g2007 1233 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 497 678 IPR014001 -
Tan09g2007 1233 Pfam DEAD/DEAH box helicase 491 661 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Tan09g2007 1233 CDD SF2_C_Hrq 691 851 - -
Tan09g2007 1233 PANTHER ATP-DEPENDENT HELICASE HRQ1 15 1229 - -
Tan09g2007 1233 CDD DEXHc_Hrq1-like 489 670 - -
Tan09g2007 1233 Gene3D - 7 95 - -
Tan09g2007 1233 Gene3D - 716 888 IPR027417 -
Tan09g2007 1233 Pfam Helicase conserved C-terminal domain 735 841 IPR001650 -
Tan09g2007 1233 ProSiteProfiles Ubiquitin domain profile. 6 77 IPR000626 GO:0005515(InterPro)
Tan09g2007 1233 Gene3D - 459 675 IPR027417 -
Tan09g2007 1233 Pfam MrfA Zn-binding domain 1118 1200 IPR018973 -
Tan09g2007 1233 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 727 883 IPR001650 -
Tan09g2007 1233 Pfam ATP-dependent helicase HRQ1, winged helix domain 877 955 - -
Tan09g2007 1233 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 536 861 IPR027417 -
Tan09g2007 1233 SMART helicmild6 761 842 IPR001650 -
Tan09g2007 1233 SMART ultradead3 485 691 IPR014001 -
Tan09g2007 1233 FunFam DEAD/DEAH box helicase 720 869 - -
Tan09g2007 1233 CDD Ubl_ubiquitin_like 8 77 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2007 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g2007 Tan-Chr9:70771414 Tan09g2009 Tan-Chr9:70771414 0.00E+00 dispersed
Tan09g2007 Tan-Chr9:70771414 Tan09g2008 Tan-Chr9:70771414 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g427 . . . . . . . . . . . Cma11g00226 . Car11g00202 Sed08g0297 . Cpe04g01445 Bhi02g00060 Tan09g2007 Cmetu02g0001 . . . . Cla06g01524 Cam06g1681 Cec06g1743 Cco06g1741 Clacu06g1648 Cmu06g1595 Cre06g2406 . . Cone13ag0024 . . . . . . Blo15g00344 . . . . . . . . Cmo11g00229 . . . . . . . . . . . . . . . . . . . . Lsi06g01393 Csa01g00335 Chy02g02407 Cme02g01807
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003378 1 12 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 4 4 1 49