Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2020 ATGGAGTCTTGGAGTTATGTTTCTGAAGGAAAGGGATGTATGTCTGATGAAATGAATTCACCTACTAGTTCGCTTGCAAGAAATAAGGATTCTTTGTTGGGGTGGGAATTCAAAAATCCCTGCAACTTTGGTAGCACAATGTTAGCAACGGGTCAACAGGTTGACAATCAAGGTTTTGGGGAACTCGTTTTCCCAGAAATGATTGGGAAACAATTACCTGACAATTCAGTTTGTGATATTTTGAGTAGCAAGGTTGTTGGTGGAAGATTTCTGAATCCAGCCATGAATTCCTCCAATGCATTTCTGGGGGAGGATGAATCCACTTCAAAGCTCTCTGGCTCTATTGTGGACTCTAGCAGTCGAGATTCATCGTTTATTGATTTGAAGCTGGGGAGATTTGCTGACCAAAGGGATGCTCATGGCTACAAATTTTTCAAGGGAGCCCCCATTTTATCATCATCTGAGTCATCGATGCCTTCGAAAAGGGTACGAGCTTCCGGGTTGAATTCCCAAACTTATTTCTGCCAAGTTTATGGCTGTAATAAGGATCTCAGCTCCTCTAAGGATTACCACAAGAGGCATAAAGTTTGTGAAGTTCACTCAAAGACTGCAAAAGTTATTGTGAATGGCATAGAACAAAGGTTTTGTCAGCAATGTAGCAGGTTTCATTTGCTAGCTGAGTTTGATGATGGTAAGCGCAGCTGTCGTAAACGCCTTGCAGGTCATAATGAACGTCGGAGAAAGCCTCAGGTGGCTATAAACTCTAGCAGGGCTGGAAGGTTTCTTCAGTCATATAATGGTAGCAGGCTTCAAGGAACGGCATTAACAGCAACGTCCTTTATCTGCCAAGAGATATTACCAAATGGTCTTTTGCATCCAGAGAAATATGGAACAAGTGATTGGTGTAGGACTGTGAAAATTGAAGACAAGAATGAATATATGCCTCTGTCTGCTGTTCATGTTCCTAGTGGTCACCTGCATTCGAAATCCCTCTTCTCACCTTACGATATTGAAACTCAAATTCTCCCTTTTCATGACAACGGACCGAATGCAGCTGCCACAAATATGATCAAAGAGAACAGTAATCAATATCCTCTTAGTGTAGGAGGTGTTAATTCCGGTTCTCGTTCTTTCTTTCATAACCCCTCATTAGGCAGTGAATACTTCAGTGTTTTTAGTGCAGCAACAACCGACCGAATATCAGGATTATCAGACTCCGGTTGTGCTCTCTCTCTTCTGTCATCTCAAACACAAAACTCCTCAACTCATTCATCAGGGATTCCCATTGCTCGCCCTTTGGTCTTGCTTGATGGCCAAAATCATTACAGTATGAGTCAACTTTCTGAAAAGCTCATGGGAGTAAGCTCCCAGGTTTCTGTGAGTGGAGTGTCCAATAAATTCAATTCATCAGGGTTGAATGCTTCCGAAGGTTGTACCCTCGGTCCCATATCAACACCTGAAACAAGTGATGCAGTAAATTTTGAAATTTCAAACCGGATTTTCCATGGGTCAAATTTAGCTGATACTAGTGAAGGCAGCCCCACCATTGACTTGCTGCAGCTTTCATCACAACTTCAGCGCGTCGAGCACCAGAGGCAAGCTATGCAGGTGAAGCAAGAAAGTAATGCTTTCTGCTGCCTCCGAATCACTTAA 1653 42.77 MESWSYVSEGKGCMSDEMNSPTSSLARNKDSLLGWEFKNPCNFGSTMLATGQQVDNQGFGELVFPEMIGKQLPDNSVCDILSSKVVGGRFLNPAMNSSNAFLGEDESTSKLSGSIVDSSSRDSSFIDLKLGRFADQRDAHGYKFFKGAPILSSSESSMPSKRVRASGLNSQTYFCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVAINSSRAGRFLQSYNGSRLQGTALTATSFICQEILPNGLLHPEKYGTSDWCRTVKIEDKNEYMPLSAVHVPSGHLHSKSLFSPYDIETQILPFHDNGPNAAATNMIKENSNQYPLSVGGVNSGSRSFFHNPSLGSEYFSVFSAATTDRISGLSDSGCALSLLSSQTQNSSTHSSGIPIARPLVLLDGQNHYSMSQLSEKLMGVSSQVSVSGVSNKFNSSGLNASEGCTLGPISTPETSDAVNFEISNRIFHGSNLADTSEGSPTIDLLQLSSQLQRVEHQRQAMQVKQESNAFCCLRIT 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 70815040 70820875 + Tan0017819.8 Tan09g2020 764363

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2020 550 Gene3D - 166 236 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan09g2020 550 Pfam SBP domain 175 248 IPR004333 GO:0003677(InterPro)
Tan09g2020 550 SUPERFAMILY SBT domain 173 252 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan09g2020 550 MobiDBLite consensus disorder prediction 1 25 - -
Tan09g2020 550 FunFam Squamosa promoter-binding-like protein 14 166 236 - -
Tan09g2020 550 Coils Coil 518 538 - -
Tan09g2020 550 ProSiteProfiles Zinc finger SBP-type profile. 172 249 IPR004333 GO:0003677(InterPro)
Tan09g2020 550 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 113 543 IPR044817 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2020 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g2018 Tan-Chr9:70815040 Tan09g2020 Tan-Chr9:70815040 0.00E+00 dispersed
Tan09g2020 Tan-Chr9:70815040 Tan09g2386 Tan-Chr9:73543696 4.50E-36 dispersed
Tan09g2019 Tan-Chr9:70815040 Tan09g2020 Tan-Chr9:70815040 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g97 . . . Bda15g00631 . . . . . . . . . . . Cpe20g00300 . Bhi02g00671 Tan09g2020 . . . . . . . . . . . . . . . . Lsi02g00513 . Chy12g01157 . . . . . . . . . . . . . . Car13g00660 . Cpe09g00953 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001097 2 4 1 1 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 5 12 1 80
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28400 PF03110 SBP 1.10E-31 No_clan Tan TF