Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2022 ATGGAAGTTAATACCTACAGTGATCTATTACATAAAATTCTCTTTCAAAGGGAATGCTACTCAGCTCGGCAGCAGAGAATTGTACTCTTAGCACTTCTGATCTTTACAGCATTCTCTTCAACTGGGGCTTACGATCCATTGGATCCAAATGGAAACATAACAATCAAATGGGATGTAGTCTCTTGGACGCCAGATGGATATGTTGCAGTAGTGACAATGAACAATTTTCAGATGTACCGCCATATCAATACACCAGGATGGACTCTAGGCTGGTCATGGGCCAAGAAAGAAGTAATATGGTCTATGGTGGGAGCTCAGACAACAGAGCAAGGAGACTGTTCCAAGTTCAAGGGAAACGTTCCTCACTGTTGTAAGAAAACCCCAATAGTTGTTGATTTACTCCCTGGTGTTCCTTACAACCAGCAATTCTCCAATTGCTGCAAGGGTGGAGTGTTGGCATCTAGGGGACAGGATCCAGCAGGTTCGGTCTCCGCCTTTCAGGTGAGTGTTGGGCTAGCTGGCACTTCAAACAAAACTGTAAAGTTGCCGAAGAACTTCACTCTGCTCGGTCCAGGGCCAGGCTACACATGTGGACCTGCAAAGGTTGTGCCTTCTACAGTCTTCCTCACTCCTGATCGCCGGCGGAAAACTCAAGCACTGATGACATGGAATGTAACCTGCACTTACTCACAATTTCTGGCCTCTAAGAACCCAACTTGCTGCGTATCACTCTCAACTTTCTACAATGATACGATCACGTCTTGCCCAACCTGTGCGTGTGGATGCCAGAACAAACATAATTGTATAAAGAGTGACTCAAAGCTATTGCACAAGAATGGAATAAACACTCCTAAAAAGGATAATACACCTTTACTACAATGCACCCATCACATGTGTCCTATTCGAGTACACTGGCATGTAAAGCTTAATTACAAGGATTACTGGCGTGTGAAGGTTGCTGTGACTAACTTCAACTATAGGATGAACTATACGCTATGGACACTGGCAGTGCAGCATCCAAATCTGAACAATGTAACTCAAGTCTTCAGTTTTGACTACAAGCCCCTTGTTCCCTATGAATCCATCAATGACACTGGCATGTTCTATGGCATGAAATTCTACAATGATCTATTAATGGAAGCAGGGCCATTTGGAAATGTGCAATCTGAAGTACTAATGAAGAAGGACAAGGACACTTTTACCTTCAAGCAGGGTTGGGCATTTCCTAGAAAAGTATACTTCAATGGCGATGAATGTCAGATGCCACCACCAGAATCATACCCATTTCTACCCAATTCTGCTCCTGAAGGCTCCAGCGCAGTTACCAAATTGGCCACCTCCTTGCTTTTGATAGTCTGGTTTTTGTGGTGA 1371 44.06 MEVNTYSDLLHKILFQRECYSARQQRIVLLALLIFTAFSSTGAYDPLDPNGNITIKWDVVSWTPDGYVAVVTMNNFQMYRHINTPGWTLGWSWAKKEVIWSMVGAQTTEQGDCSKFKGNVPHCCKKTPIVVDLLPGVPYNQQFSNCCKGGVLASRGQDPAGSVSAFQVSVGLAGTSNKTVKLPKNFTLLGPGPGYTCGPAKVVPSTVFLTPDRRRKTQALMTWNVTCTYSQFLASKNPTCCVSLSTFYNDTITSCPTCACGCQNKHNCIKSDSKLLHKNGINTPKKDNTPLLQCTHHMCPIRVHWHVKLNYKDYWRVKVAVTNFNYRMNYTLWTLAVQHPNLNNVTQVFSFDYKPLVPYESINDTGMFYGMKFYNDLLMEAGPFGNVQSEVLMKKDKDTFTFKQGWAFPRKVYFNGDECQMPPPESYPFLPNSAPEGSSAVTKLATSLLLIVWFLW 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 70831783 70834572 + Tan0007131.1 Tan09g2022 764365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2022 456 Pfam COBRA-like protein 67 230 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Tan09g2022 456 PIRSF COBRA 16 456 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Tan09g2022 456 PANTHER PROTEIN COBRA 29 450 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g2022 Tan-Chr9:70831783 Tan09g2023 Tan-Chr9:70835222 5.50E-189 tandem
Tan01g0795 Tan-Chr1:7584424 Tan09g2022 Tan-Chr9:70831783 4.70E-111 transposed
Tan01g4517 Tan-Chr1:110815503 Tan09g2022 Tan-Chr9:70831783 4.70E-35 transposed
Tan02g0716 Tan-Chr2:6675601 Tan09g2022 Tan-Chr9:70831783 2.90E-101 transposed
Tan04g1898 Tan-Chr4:62525551 Tan09g2022 Tan-Chr9:70831783 1.00E-213 wgd
Tan05g2342 Tan-Chr5:74854290 Tan09g2022 Tan-Chr9:70831783 3.60E-160 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2022 - - - 0.0