Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2044 ATGGCTTTCCTAAGTAAGGTTGGAAACATTCTAAGGCAGGGTGCAAATAAGAAGATTGGATCGGATCTGCAAGCTTCCAGTTTGTCTATCTGTCAAGCTGTACGATGGATGTCTTCCATGCAAAGTTCAAAACTTTTTGTTGGAGGTATTTCATACAGCACTGATGATCAAAGTCTGAGGGAAGCCTTTACTAAATATGGGGAAGTAGTTGAAGCTAGGGTCATCGTGGACCGCGAAACTGGAAGATCAAGAGGATTTGGGTTTGTGACTTACACCTCTAGTGAGGAGGCCTCTAGTGCCATCCAGGCATTGGATGGACAGGATCTCCAAGGTCGTCGCGTGAGGGTGAATTATGCTAATGATAGAAGTCGTGGTATTGGTGGTGGTGGTTTTGGTGACGGCGGCTATGGTGGTGGAGCTGGCGGCTATGGTGGTGGTGGCTATGGTGGTGGAGCTGGCGGCTATGGTGGTGGTGGCTATGGCGGTGGAGCTGGTGGCTATGGCGGCGGTGGCTATGGTGGTGGTGCTGGAGGTTATGGCGGTGGCGGGAGTGGAGGTTATGGTGATGGTAGTGGTGGATATTCTGGGACAGGATATAGTTCCGGTGGTAACTATTCGAGCAATTTTGGCGGTGATAACCAAGGGAGCGGAGGTAATTATGGCAACGATTTTGCCAGTGACAACCGTGGAAGTGTTGGTACAGGTGGTGGCTTTGGTGGGAATGATACTGGCTACAATGCTGCTAGCAATTTTGCTGGTGGAAACACATACGGAAGTGGGACTACCGGCAGTGGAAACTTTAACGTCAGCGGCGGCGGCGGCGGCGGCGGCGACTATTTTGGCAACGGCGGGTCTGATGCAGGCTCTGGTTTTGGAGGAGGATACACTGGTGGGGATGAATTTGGAAGCAATGAAACAAACACCATGAATGCATCTGGAGATCAGGAGCCACTGGAAGGAAATGATAGGGACGAAGATGATGACACAAATGACTTTGCTAAAAGAGCCTGA 1011 50.64 MAFLSKVGNILRQGANKKIGSDLQASSLSICQAVRWMSSMQSSKLFVGGISYSTDDQSLREAFTKYGEVVEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLQGRRVRVNYANDRSRGIGGGGFGDGGYGGGAGGYGGGGYGGGAGGYGGGGYGGGAGGYGGGGYGGGAGGYGGGGSGGYGDGSGGYSGTGYSSGGNYSSNFGGDNQGSGGNYGNDFASDNRGSVGTGGGFGGNDTGYNAASNFAGGNTYGSGTTGSGNFNVSGGGGGGGDYFGNGGSDAGSGFGGGYTGGDEFGSNETNTMNASGDQEPLEGNDRDEDDDTNDFAKRA 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 70948428 70951709 + Tan0000074.1 Tan09g2044 764387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2044 336 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 123 IPR052462 GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0080156(PANTHER)
Tan09g2044 336 MobiDBLite consensus disorder prediction 255 336 - -
Tan09g2044 336 SMART rrm1_1 44 117 IPR000504 GO:0003723(InterPro)
Tan09g2044 336 Pfam RNA recognition motif 45 115 IPR000504 GO:0003723(InterPro)
Tan09g2044 336 Gene3D - 21 140 IPR012677 -
Tan09g2044 336 CDD RRM2_NsCP33_like 44 119 IPR048289 -
Tan09g2044 336 MobiDBLite consensus disorder prediction 300 315 - -
Tan09g2044 336 SUPERFAMILY RNA-binding domain, RBD 40 152 IPR035979 GO:0003676(InterPro)
Tan09g2044 336 PRINTS Eggshell protein signature 39 55 - -
Tan09g2044 336 PRINTS Eggshell protein signature 181 199 - -
Tan09g2044 336 PRINTS Eggshell protein signature 126 141 - -
Tan09g2044 336 PRINTS Eggshell protein signature 155 165 - -
Tan09g2044 336 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 43 121 IPR000504 GO:0003723(InterPro)
Tan09g2044 336 MobiDBLite consensus disorder prediction 255 269 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2044 K12741 - - csv:101218446 221.861
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2363 Tan-Chr5:74980524 Tan09g2044 Tan-Chr9:70948428 2.50E-48 dispersed
Tan08g0745 Tan-Chr8:7631230 Tan09g2044 Tan-Chr9:70948428 4.70E-20 dispersed
Tan08g0746 Tan-Chr8:7631230 Tan09g2044 Tan-Chr9:70948428 4.70E-20 dispersed
Tan09g2044 Tan-Chr9:70948428 Tan09g2319 Tan-Chr9:73040360 9.90E-18 dispersed
Tan11g1085 Tan-Chr11:8607392 Tan09g2044 Tan-Chr9:70948428 6.80E-07 dispersed
Tan01g0419 Tan-Chr1:3861415 Tan09g2044 Tan-Chr9:70948428 8.20E-10 transposed
Tan01g4493 Tan-Chr1:110503265 Tan09g2044 Tan-Chr9:70948428 5.00E-13 transposed
Tan02g2285 Tan-Chr2:91708930 Tan09g2044 Tan-Chr9:70948428 4.10E-12 transposed
Tan03g0981 Tan-Chr3:66280739 Tan09g2044 Tan-Chr9:70948428 1.60E-17 transposed
Tan05g1313 Tan-Chr5:16044031 Tan09g2044 Tan-Chr9:70948428 1.20E-19 transposed
Tan05g3348 Tan-Chr5:85284610 Tan09g2044 Tan-Chr9:70948428 6.60E-13 transposed
Tan08g1989 Tan-Chr8:71993996 Tan09g2044 Tan-Chr9:70948428 3.50E-12 transposed
Tan08g2319 Tan-Chr8:74493272 Tan09g2044 Tan-Chr9:70948428 7.90E-07 transposed
Tan11g1073 Tan-Chr11:8432219 Tan09g2044 Tan-Chr9:70948428 1.40E-13 transposed
Tan05g2362 Tan-Chr5:74980524 Tan09g2044 Tan-Chr9:70948428 2.50E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g657 Blo04g00789 Blo16g00169 Bda06g00522 Bda15g00622 . Bpe13g00312 Bma06g00152 Bma12g00965 Cmo13g01121 . . . . . Sed08g0275 Cpe20g00073 Cpe04g01460 Bhi02g00095 Tan09g2044 Cmetu02g1487 . Hepe09g0273 . . Cla06g01539 Cam06g1698 Cec06g1760 Cco06g1759 Clacu06g1665 Cmu06g1611 Cre06g2424 Cone2ag0802 Cone16ag0207 Cone13ag0035 Cone19ag0044 Lsi02g00118 Csa01g00598 Chy12g01500 Cme12g01944 . Blo15g00338 Bda11g01723 Bda14g00879 Bpe07g00756 Bpe15g00581 Bma03g00850 . Sed08g2119 . Cmo11g00211 Cma13g01075 . Car13g00911 Car18g00005 . Cpe18g00707 Bhi08g01085 Tan05g2363 Cmetu12g0852 Lac10g0147 Hepe07g2465 . . Cla04g01155 Cam04g1213 Cec01g1724 Cco01g1769 Clacu04g1240 Cmu04g1219 Cre01g1515 Lsi06g01412 Csa01g00294 Chy02g02442 Cme02g01829
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000800 6 2 2 5 5 2 3 2 2 3 2 2 5 3 2 4 2 6 3 2 2 3 3 2 2 2 2 8 3 2 92