Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2059 ATGGGGGGAGAAAATGACATGAAAACGTGGATTTCTGATCAGTTAATGTCATTGCTTGGTTTCTCTCAGCCAACGATTGTGCAGTATATGATCGGACTATCCAAACAAGCAGCATCACCTGCCGATGTAGTGAGCAAGTTGGTGGTAGATTTTGGCTTGCCATCTTCTAATGAAACGTTGGCTTTTGCCGAAGGAATTTTCTCTCGAGTGCCACGCAAGAAATCATCTGGTTTAAATCTTTATCAGAAGCAAGAGAGAGAAGCTGCAATTATGGCAAGAAAGCAAAAGACATATGCACTGCTTGATGCTGATGACGAAGATGTCATTGAAGATAAAGGAGGCAGCGGTGATCCCCGAGAAACTGAAAATCGCAAAAGAAGTTTTAGAAAGAAAAATGAATATCAAGAAGATGAAGATGATGAGAAGGAAAGTGCTTTTGAAAGAGAAAATAGGCAGGTTAAAAGGAGGACTTCCAGTTCTGAAGACGATGGCTCGGAGTCGGAGGAAGAGCGATTGCGTGATCAAAGAGAGAGAGAGCAATTAGAGCGAAATATAAGAGAGCGGGATGCTGCTGGAACCAAAAAGTTAACAGAGCAGAAATTGAGCAAGAAGGAGGAAGAAGAGGCAATTCGTAGATCAAAAGCTTTGGAGAATAATGAAATGGATACTTTGAGGAAAGTTTCAAGACAGGAGTATTTAAAGAAAAGGGAGGAGAAGAAACTGGAAGAAATCAGAGATGATATAGAAGACGAACAATATCTTTTTGAAGGTGTGAAGCTTACTGAAGCAGAATATCGGGAGCTAAGATATAAGAAGGAAATATATGAACTTGTGAAAAAGCGGACAGATGATTCTGATGACATCAATGAGTACAGGATGCCTGAAGCTTATGATCAAGAAGGAGGTGTTAATCAGGATAAGAGATTTGCAGTGGCATTGCAGCGCTATAGGGATTCAGGTGCTGCAGATAAAATGAACCCATTTGCAGAACAAGAGGCATGGGAGGAACACCAAATAGCAACAATGAAATTTGGTTCCAAAAATAAAAAGCAAGCATCCGATGATTATCAGTTTGTATTTGAGGATCAGATTGAGTTTATTAAGGCATCAGTTATGGAAGGTGATGAGTTTGTTGATGAACGTCAGACTGAATCACTTGAGAAGTCCAAGGCTAAGTCAGCTCTGGAGAAGCTGCAGGAGGAGAGAAAAACATTGCCAATCTATCCATATCGTGATCAGTTGCTCCAAGCTGTAAATGATTATCAGGTTCTTGTAATTGTCGGTGAAACTGGTTCTGGAAAGACCACACAGATACCTCAATATCTTCATGAAGCTGGGTACACAAAGCGAGGGAAAATTGGATGCACACAACCACGTCGAGTTGCTGCTATGAGCATTGCTGCCCGAGTATCTCAAGAACTGGGTGTCAAGCTTGGCCACGAGGTTGGTTATTCAATACGTTTTGAGGATTGCACGTCAGATAAGACTGTTTTAAAGTACATGACAGATGGGATGTTGTTACGAGAATTCCTTGGTGAACCTGACCTTGCAAGCTACAGTGTTATAATGGTGGACGAGGCTCATGAAAGAACATTATCAACTGATGTTCTGTTTGGGTTAGTGAAGGATATTGCAAGGTTTCGACCTGATCTGAAGTTGCTAATTTCAAGTGCAACACTTGATGCTGAGAAGTTCAGTGATTACTTTGATTCCGCTCCAATATTTAAAATTCCTGGTAGACGATATCCTGTTGAAATTCACTTTACAAAAGCTCCAGAAGCAGACTATTTAGATGCAGCAATTGTGACTGCGCTTCAGATTCATGTCACAAAGCCTCCAGGAGATATATTGGTGTTTCTCACTGGTCAAGAAGAGATTGAAGCAGCTGAGGAAATAATGAAACACAGAACTCGAGGACTAGGCACAAAAATTGCTGAACTCATTATCTGCCCCATATATGCTAACTTACCAACAGAGCTACAGGCTAAGATATTTGAACCCACACCCATAGGAGCAAGGAAAGTTGTCCTGGCAACTAATATAGCAGAGACATCATTGACGATTGATGGGATAAAATACGTTATTGATCCCGGCTTTTCAAAAATAAAATCCTATAACCCAAGGACTGGGATGGAGTCGTTGCAAGTGAGTCCCATTTCTAAAGCCTCAGCAAACCAGAGAGCAGGCCGTTCTGGACGAACAGGCCCTGGAATGTGCTTTCGCTTGTATACTGCTTATAGTTATTATAATGAGATGGAAGACAATACAGTACCAGAAATACAAAGAACGAACCTTGCTAATGTCGTGCTCACACTTAAGAGCCTTGGTATTCATGACTTGGTAAATTTTGATTTTATGGACCAACCTCCATCAGAAGCATTGCTAAAAGCCTTGGAACTGCTTTATGCACTTGGTGCTCTAAATAAACTTGGTGAACTGACTAAGTTAGGGAGAAGGATGGCAGAGTTTCCTCTTGATCCCATGCTTTCTAAGATGATGGTTGCTTCTGAGAAGTTCAAGTGTTCAGATGAGATTATTTCTATTGCAGCGATGCTTTCTATTGGAAATTCTATCTTTTATCGTCCAAAGGATAAACAAGTTCATGCTGACAATGCTCGAATGAATTTTCACACCGGGAATGTGGGGGATCACATTGCACTGCTGAAGGTCTACAACTCTTGGAGGGAAACAAATTACTCTACACAGTGGTGCTACGAGAATTACATCCAGGTTAGAAGTATGAAACGTGCTAGAGATATCAGAGATCAACTTGAGGGGCTTTTGGAAAGGGTTGAAATTGAACTAACTTCAAATTTGAATGACTTGGATGCAATAAAGAAGACCATAATATCGGGATTTTTCCCTCACTCTGCAAAGTTGCAAAAGAATGGCTCTTATCGGACCGTTAAGCATCCGCAGACAGTACATATACATCCTAGCTCAGGATTGGCTCAGGTTCTTCCAAGGTGGGTTGTATACCATGAATTGGTATGTACCTCAAAGGAATATATGAGACAGGTAACGGAATTGAAGCCTGAATGGTTGGTTGAAATTGCTCCACATTTCTATCAGCTTAAGGATGTCGAAGATTTGAGTCAAAAGAAGATGCCTCGCGGACAAGGGCGACCTGCAGCGAGCTAA 3141 41.26 MGGENDMKTWISDQLMSLLGFSQPTIVQYMIGLSKQAASPADVVSKLVVDFGLPSSNETLAFAEGIFSRVPRKKSSGLNLYQKQEREAAIMARKQKTYALLDADDEDVIEDKGGSGDPRETENRKRSFRKKNEYQEDEDDEKESAFERENRQVKRRTSSSEDDGSESEEERLRDQREREQLERNIRERDAAGTKKLTEQKLSKKEEEEAIRRSKALENNEMDTLRKVSRQEYLKKREEKKLEEIRDDIEDEQYLFEGVKLTEAEYRELRYKKEIYELVKKRTDDSDDINEYRMPEAYDQEGGVNQDKRFAVALQRYRDSGAADKMNPFAEQEAWEEHQIATMKFGSKNKKQASDDYQFVFEDQIEFIKASVMEGDEFVDERQTESLEKSKAKSALEKLQEERKTLPIYPYRDQLLQAVNDYQVLVIVGETGSGKTTQIPQYLHEAGYTKRGKIGCTQPRRVAAMSIAARVSQELGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREFLGEPDLASYSVIMVDEAHERTLSTDVLFGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEIHFTKAPEADYLDAAIVTALQIHVTKPPGDILVFLTGQEEIEAAEEIMKHRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPIGARKVVLATNIAETSLTIDGIKYVIDPGFSKIKSYNPRTGMESLQVSPISKASANQRAGRSGRTGPGMCFRLYTAYSYYNEMEDNTVPEIQRTNLANVVLTLKSLGIHDLVNFDFMDQPPSEALLKALELLYALGALNKLGELTKLGRRMAEFPLDPMLSKMMVASEKFKCSDEIISIAAMLSIGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYNSWRETNYSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIELTSNLNDLDAIKKTIISGFFPHSAKLQKNGSYRTVKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVEDLSQKKMPRGQGRPAAS 1046
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 71072638 71086567 - Tan0005364.1 Tan09g2059 764402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2059 1046 SMART ultradead3 403 587 IPR014001 -
Tan09g2059 1046 Gene3D - 781 938 - -
Tan09g2059 1046 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 601 776 IPR001650 -
Tan09g2059 1046 MobiDBLite consensus disorder prediction 169 215 - -
Tan09g2059 1046 MobiDBLite consensus disorder prediction 144 162 - -
Tan09g2059 1046 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 945 1021 IPR011709 -
Tan09g2059 1046 Pfam AAA domain 422 546 IPR049945 GO:0016887(InterPro)
Tan09g2059 1046 Gene3D - 581 756 IPR027417 -
Tan09g2059 1046 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 780 881 - -
Tan09g2059 1046 Pfam Helicase associated domain (HA2), winged-helix 797 825 IPR048333 -
Tan09g2059 1046 Pfam Helicase associated domain (HA2), ratchet-like 826 887 - -
Tan09g2059 1046 Coils Coil 164 184 - -
Tan09g2059 1046 Coils Coil 227 254 - -
Tan09g2059 1046 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 581 756 - -
Tan09g2059 1046 Pfam Helicase conserved C-terminal domain 609 735 IPR001650 -
Tan09g2059 1046 SMART helicmild6 630 735 IPR001650 -
Tan09g2059 1046 MobiDBLite consensus disorder prediction 108 215 - -
Tan09g2059 1046 Coils Coil 914 934 - -
Tan09g2059 1046 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 520 529 IPR002464 -
Tan09g2059 1046 Coils Coil 381 401 - -
Tan09g2059 1046 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 400 929 IPR027417 -
Tan09g2059 1046 MobiDBLite consensus disorder prediction 112 137 - -
Tan09g2059 1046 SMART ha2_5 796 888 IPR007502 -
Tan09g2059 1046 PANTHER ATP-DEPENDENT RNA HELICASE 182 1029 - GO:0003723(PANTHER)|GO:0004386(PANTHER)|GO:0005622(PANTHER)|GO:0071013(PANTHER)
Tan09g2059 1046 Gene3D - 360 580 IPR027417 -
Tan09g2059 1046 CDD SF2_C_RHA 582 743 - -
Tan09g2059 1046 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 415 578 IPR014001 -
Tan09g2059 1046 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 362 580 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2059 K12813 - - csv:101206270 1910.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0482 Tan-Chr8:4663268 Tan09g2059 Tan-Chr9:71072638 4.30E-220 dispersed
Tan08g1618 Tan-Chr8:65682823 Tan09g2059 Tan-Chr9:71072638 2.50E-88 dispersed
Tan09g2059 Tan-Chr9:71072638 Tan09g1857 Tan-Chr9:69855420 1.80E-86 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g260 . . . Bda15g00503 Bpe12g00704 . . . . . Cma10g00315 . Car10g00298 . Sed02g0995 . . Bhi02g00111 Tan09g2059 Cmetu09g0221 . Hepe09g0369 . . . . . . . . . . . . . . . . . Blo13g00181 . . . . . . Bma08g00006 . Cmo10g00338 . . . . . . . . . . . . . . . . . . . . . Lsi06g01305 Csa01g00410 Chy02g02334 Cme02g01706
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005975 1 6 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 39