Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2092 ATGGCCGAGCCTTCGTCGAGTTTGCCCATGGATTCTCTCGGCGACATCGACGACTTCATTTCGGCCAATGAAGGAGAGGGTTCACTGCCATGGAACACGTTTAGTCATGTTTTTGAATTCGTACAAAATGGGAATCGAGCATTTAGAGATAATCACTTTGAAGAGGCAATCAAGTATTACTCAAGAGCTAATAATATCAAACCAGGTGATCCGGTTATACTCAACAATAGAAGTGCTGCTTATATCAGGATTAGTCAATTCCTGAAAGACAGACCACCATCTGCTTCTGAATATCGACCATTGAATGGGTTGGATCCTACAGTACTTTCTGAACTTGCACTAAAAGATGCTGAGAAGCTGATGGACCTATGCGGTAAATCAGTGAAACCATATATTCTGAAGGCTAATGCTCTCATTCTCCTAGAAAAATATGACATGGCAAAGGATATTATTCTATCTGGCCTTCAAATTGACCCTCTTAGCAATCCTCTTCAGGCTTCTCTTCAGAGATTGGAGAGAATAGCTGTGAGTATGACGGGAAGGGGACGCCATGGGCTACCAGATCGTAGTGACGACTTTGATTGCACCCTTTGTTTTAAGCTTCTTTATGAGCCCATCACAACTCCTTGTGGGCATTCCTTTTGCCGTTCTTGCTTATTTCAGTCAATGGATCGTGGTAATAAATGTCCGCTGTGCCGAACAGTTCTTTTTATCAGTTCAAGAACATGTGCAATCAGTGTTACGCTGAGCAACATTATTCAGAAGAACTTCCCAGAGGAGTATGCTGAAAGGAAGTCAGAACATGATGGTTTGGCAAATTTTGGTGTCGATTTAATACCTCTTTTTGTCATGGATGTTGTTATCCCATGTCAGAAATTTCCGCTTCACATATTTGAACCCCGCTACAGACTTATGGTCAGGAGGGTAATGGAAGGCAACCATCGTATGGGAATGGTTATTGTGGATTCTACAACAGGTTCTATTGCTGATTTTGCATGTGAAGTGGAAATTACCGAGTGTGAGCCACTTGCGGACGGACGTTTTTATCTAGAGATTGAAAGTCGTCGAAGACTTCGCATTATTCGATCTTGGGATCAAGATGGGTACCGAGTGGCAGAGGTCGAATGGGTCAATGATGTAATTCCCCCAGAAGGGACAAGAGAGCGGGCAGAATTGCAGGAAATGACAAATGGTGCAGCAGAGTACGCTCAATCATGGATAAGGAGGGCAAAAGAAGCATCTAGACGAGATCATAACAAACACGATAGACTTCTTAACGTGGAAGCAATGATGCCCTCATCACGAGATCCTGAACGGTTCAGCTTCTGGCTTGCTACCCTTTCAAATCGGAGGCCCCTGGAAAGATTGGAACTTCTACGAATGCAGGATACAAGAGAGAGGATAAGGCGTGGACTTGTATATCTCAAAGCAGAAGAACAGGGCTGTCAAGTGCAATGA 1458 43.69 MAEPSSSLPMDSLGDIDDFISANEGEGSLPWNTFSHVFEFVQNGNRAFRDNHFEEAIKYYSRANNIKPGDPVILNNRSAAYIRISQFLKDRPPSASEYRPLNGLDPTVLSELALKDAEKLMDLCGKSVKPYILKANALILLEKYDMAKDIILSGLQIDPLSNPLQASLQRLERIAVSMTGRGRHGLPDRSDDFDCTLCFKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRTVLFISSRTCAISVTLSNIIQKNFPEEYAERKSEHDGLANFGVDLIPLFVMDVVIPCQKFPLHIFEPRYRLMVRRVMEGNHRMGMVIVDSTTGSIADFACEVEITECEPLADGRFYLEIESRRRLRIIRSWDQDGYRVAEVEWVNDVIPPEGTRERAELQEMTNGAAEYAQSWIRRAKEASRRDHNKHDRLLNVEAMMPSSRDPERFSFWLATLSNRRPLERLELLRMQDTRERIRRGLVYLKAEEQGCQVQ 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 71289897 71301379 - Tan0005677.1 Tan09g2092 764435

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2092 485 SUPERFAMILY RING/U-box 188 256 - -
Tan09g2092 485 CDD RING-HC_LONFs_rpt2 192 236 - -
Tan09g2092 485 ProSiteProfiles Zinc finger RING-type profile. 195 233 IPR001841 -
Tan09g2092 485 ProSiteProfiles Lon N-terminal domain profile. 276 479 IPR003111 -
Tan09g2092 485 Gene3D Tetratricopeptide repeat domain 35 178 IPR011990 GO:0005515(InterPro)
Tan09g2092 485 Pfam ATP-dependent protease La (LON) substrate-binding domain 279 476 IPR003111 -
Tan09g2092 485 SUPERFAMILY PUA domain-like 279 475 IPR015947 -
Tan09g2092 485 SUPERFAMILY TPR-like 38 162 IPR011990 GO:0005515(InterPro)
Tan09g2092 485 ProSiteProfiles TPR repeat profile. 37 70 IPR019734 GO:0005515(InterPro)
Tan09g2092 485 PANTHER RING FINGER PROTEIN 127 36 476 - GO:0061630(PANTHER)
Tan09g2092 485 SMART ring_2 195 232 IPR001841 -
Tan09g2092 485 ProSitePatterns Zinc finger RING-type signature. 210 219 IPR017907 -
Tan09g2092 485 Pfam Zinc finger, C3HC4 type (RING finger) 195 232 - -
Tan09g2092 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 273 IPR013083 -
Tan09g2092 485 Gene3D - 277 379 IPR046336 -
Tan09g2092 485 Gene3D - 411 477 - -
Tan09g2092 485 SMART lon_5 278 477 IPR003111 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2092 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g591 . . . . . . . . . . . Cma11g00126 . Car11g00169 Sed08g1458 . Cpe04g01483 Bhi02g00296 Tan09g2092 Cmetu06g0079 . . . . Cla06g01573 . . . . . . Cone2ag0829 Cone16ag0186 Cone13ag0056 Cone19ag0059 . . . . . . . . . . . . . . Cmo11g00185 . . . . . . . . . . . . . . . . . . . . Lsi06g01447 Csa01g00256 Chy02g02479 Cme02g01864
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008465 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 4 1 1 35