Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2109 ATGGCGTTTCTTGGACTTCTCTTGGTGGGGTTTCTCCTCTCTTTGGGATGTGATTCTGTTCATGGCGATAATGGAGGTTGGATTGATGCCCACGCTACGTTCTACGGTGGGGGAGACGCTGCTGGTACAATGGGAGGGGCTTGTGGCTACGGGAACCTGTACAGCCAAGGGTATGGAACGAACACAGCGGCTTTAAGCACAGCCCTTTTCAACAATGGACTGAGCTGTGGCGCTTGCTTTGAAATCAAGTGCGTAAATGATCCACAATGGTGTCTTCCAAAGTCCATCGTGGTCACTGCCACAAACTTCTGCCCACCAAACAATGCACTCCCCAACAACGCCGGCGGCTGGTGTAATCCTCCCCAGCACCATTTCGACCTCTCCCAGCCCGTCTTCCAGCAAATCGCCCAATTCAAAGCCGGCATTGTTCCAGTGGCTTACAGAAGGGTCTCTTGTCAGAAGAAAGGAGGAATAAGATTCACAATCAACGGCCATTCATACTTCAATTTAGTTCTTGTAACGAACGTTGGTGGAAGTGGGGATGTTCGTGGTGTGTGGATCAAAGGGTCGAAAACAGGGTGGGAAGCAATGTCGAGGAACTGGGGCCAGAACTGGCAGAGCAATTCATATCTGAATGGACAAAGCCTGTCATTCAAAGTTACCGCCGGCGATGGCCGGACGGTGATCTCTAATAACGTAGTGCCAGATGGGTGGAGCTTTGGTCAGACTTTTAGTGGGCTGCAGTTCCCATGA 753 51.13 MAFLGLLLVGFLLSLGCDSVHGDNGGWIDAHATFYGGGDAAGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDPQWCLPKSIVVTATNFCPPNNALPNNAGGWCNPPQHHFDLSQPVFQQIAQFKAGIVPVAYRRVSCQKKGGIRFTINGHSYFNLVLVTNVGGSGDVRGVWIKGSKTGWEAMSRNWGQNWQSNSYLNGQSLSFKVTAGDGRTVISNNVVPDGWSFGQTFSGLQFP 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 71460094 71461577 + Tan0007618.2 Tan09g2109 764452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2109 250 Gene3D - 155 249 IPR036749 -
Tan09g2109 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 246 IPR007117 -
Tan09g2109 250 FunFam Expansin 157 249 - -
Tan09g2109 250 FunFam Expansin 17 153 - -
Tan09g2109 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 157 IPR007112 -
Tan09g2109 250 Gene3D - 14 153 IPR036908 -
Tan09g2109 250 Pfam Expansin C-terminal domain 158 235 IPR007117 -
Tan09g2109 250 PANTHER EXPANSIN-A15 19 248 IPR002963 GO:0009664(InterPro)
Tan09g2109 250 PRINTS Expansin signature 57 71 IPR002963 GO:0009664(InterPro)
Tan09g2109 250 PRINTS Expansin signature 232 248 IPR002963 GO:0009664(InterPro)
Tan09g2109 250 PRINTS Expansin signature 96 106 IPR002963 GO:0009664(InterPro)
Tan09g2109 250 PRINTS Expansin signature 132 145 IPR002963 GO:0009664(InterPro)
Tan09g2109 250 PRINTS Expansin signature 203 224 IPR002963 GO:0009664(InterPro)
Tan09g2109 250 PRINTS Expansin signature 115 132 IPR002963 GO:0009664(InterPro)
Tan09g2109 250 PRINTS Expansin signature 84 95 IPR002963 GO:0009664(InterPro)
Tan09g2109 250 PRINTS Expansin signature 168 189 IPR002963 GO:0009664(InterPro)
Tan09g2109 250 PRINTS Expansin signature 156 168 IPR002963 GO:0009664(InterPro)
Tan09g2109 250 CDD DPBB_EXPA_N 26 152 - -
Tan09g2109 250 Pfam Lytic transglycolase 62 147 IPR009009 -
Tan09g2109 250 SUPERFAMILY Barwin-like endoglucanases 26 175 IPR036908 -
Tan09g2109 250 SUPERFAMILY PHL pollen allergen 154 245 IPR036749 -
Tan09g2109 250 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576(InterPro)
Tan09g2109 250 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576(InterPro)
Tan09g2109 250 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576(InterPro)
Tan09g2109 250 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576(InterPro)
Tan09g2109 250 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576(InterPro)
Tan09g2109 250 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576(InterPro)
Tan09g2109 250 SMART dpbb_1 62 147 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1065 Tan-Chr4:9555230 Tan09g2109 Tan-Chr9:71460094 1.50E-116 dispersed
Tan05g2430 Tan-Chr5:75460904 Tan09g2109 Tan-Chr9:71460094 5.90E-97 dispersed
Tan09g2109 Tan-Chr9:71460094 Tan11g0502 Tan-Chr11:4239859 1.70E-110 dispersed
Tan09g2108 Tan-Chr9:71460094 Tan09g2109 Tan-Chr9:71460094 3.10E-149 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2109 K20628 - csv:101222936 458.759