Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2110 ATGGCCACCGTCACCACTCAAGCTTCCGCCGCCGTTTTCCGGCCATGCGCCGCCCGATCGAGGTTCCTTTCTGGGTCATCCGGTAGACTCCACCGTGAGCTGTCGGTTAAACCGGTGGCTGCTTCGTCGTTTTCATCTTTCAAGGTTGAAGCCAAGAAGGGAGAATGGTTGCCTGGTCTGCCATCTCCGGCATACTTAAATGGAAGTCTTCCGGGCGATAACGGATTTGACCCATTGGGTCTAGCGGAAGACCCAGAGAACTTGAGGTGGTATGTGCAAGCAGAGCTCGTAAACGGGCGGTGGGCGATGTTGGGTGTCGCCGGAATGCTGCTGCCGGAGGTGTTCACCAAGATCGGAATCATCAACGCCCCTCAATGGTACGACGCCGGAAAAGCAGAGTACTTCGCCTCATCTTCAACCCTGTTCGTGATCGAGTTCATCCTCTTCCATTACGTGGAAATCCGAAGATGGCAGGACATTAAAAACCCAGGCAGCGTCAACCAAGACCCCATTTTCAAACAATACAGTTTGCCCCCAAATGACGTCGGTTACCCTGGTGGCATTTTCAACCCCCTCAATTTCGCTCCTACTCTTGAAGCCAAAGAGAAGGAAATCGCCAATGGGAGACTTGCGATGTTGGCGTTTTTGGGGTTCATTGTGCAACACAATGTGACTGGGAAGGGGCCGTTTGACAACCTTTTGCAGCACATTTCTGACCCATGGCACAACACCATTATCCAAACGTTCGGTGGCAACTAA 759 52.57 MATVTTQASAAVFRPCAARSRFLSGSSGRLHRELSVKPVAASSFSSFKVEAKKGEWLPGLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDPWHNTIIQTFGGN 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 71467726 71469222 + Tan0004502.1 Tan09g2110 764453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2110 252 Gene3D Chlorophyll a/b binding protein domain 63 242 - -
Tan09g2110 252 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 24 245 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Tan09g2110 252 FunFam Chlorophyll a-b binding protein, chloroplastic 63 242 - -
Tan09g2110 252 SUPERFAMILY Chlorophyll a-b binding protein 53 249 - -
Tan09g2110 252 Pfam Chlorophyll A-B binding protein 63 222 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1837 Tan-Chr2:84416418 Tan09g2110 Tan-Chr9:71467726 3.90E-54 dispersed
Tan09g2110 Tan-Chr9:71467726 Tan05g0624 Tan-Chr5:4631506 6.70E-27 dispersed
Tan02g1249 Tan-Chr2:32299137 Tan09g2110 Tan-Chr9:71467726 2.20E-25 transposed
Tan04g0044 Tan-Chr4:410879 Tan09g2110 Tan-Chr9:71467726 2.30E-62 transposed
Tan09g0704 Tan-Chr9:56612610 Tan09g2110 Tan-Chr9:71467726 5.20E-41 transposed
Tan09g1055 Tan-Chr9:62798005 Tan09g2110 Tan-Chr9:71467726 1.20E-55 transposed
Tan11g0846 Tan-Chr11:6949329 Tan09g2110 Tan-Chr9:71467726 2.60E-39 transposed
Tan05g2431 Tan-Chr5:75463232 Tan09g2110 Tan-Chr9:71467726 2.90E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2110 K08910 - csv:101222701 491.5