Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2117 ATGAATCCTGAAGTGTTATCAGTAGATGAAAATGATAAGCTCGCAACAAGCAAAACTGAGAAAGAACAGAATGATGCACCCAACTCAAAAGAGAAACTGAAGAAACCAGATAAAATACTTCCATGTCCCCGCTGCAATAGCATGGAAACTAAGTTTTGTTATTACAATAATTATAACGTCAATCAACCACGTCATTTTTGTAAAGCCTGTCAAAGATATTGGACTGAAGGCGGTACCATGAGGAATGTCCCTGTTGGAGCTGGCCGCCGAAAGAACAAGAACTCTGCCTCACACTACCGACACATTACGATCTCAGAGGCTCTTCAAGCTGCACAGATTGATGTTCCCAATGGGATCAACCACCTAGCATCAAAAAGCAATGGCCGAGTCCTCAATTTCAGCGTAAACGCACCTGGATGTGAATCTATGGCCACTGTCCTCAATCCTGGAGAAAGAAAGGTCTTGAATGGAACTAGGAATGAATTTCATAGATTGGAAGACCAAGGAATCAAAGCGCCTTGTAAGGGTGGGGAAACTGGCGACGATTGTTCCAGTGCATCTTCAGTGACAATGTCAAGTTCAATGGAGGAAGGAGCCAGGAGGTGCCCTCAAGAACCACAGATGCAGAACATCAATGGTTTCCCTCCTCAAATCCCATATCTTCCTGGTGTTCCTTGGCCTTGTTCATGGAATGCACCAATACCTCCACCAGCCTTTTGCCCTCCTGGAGTTCCTTTACCATTCTACCCTGCAACATATTGGAGCTGTAGCGTTCCAGGTGCTTGGAATATTCCTTGGTTCACTCCACAACCTTGTTCTCCAAACATTGGTCCGAGATCTCCGATACTCGGGAAGCATCCAAGAGATGGCGACAAACTCCAGGCTGATAATTCTGAGATGGAAGAACCTCCAAAACAGAAAAATGGATCTGTTTTGGTTCCAAAAACTTTAAGGATTGATGATCCGAACGAAGCTGCTAAGAGCTCAATATGGGAGACACTCGGTATTAAGAATGATTCAATCAAAGCTGTTGATCTGTCTAAGGTCTTCCAATCAAAGGGCGATCAAAAGAGAAACGTTTCTGAAGTGTTGTCTCCAGTTTTGCAAGCTAACCCTGCAGCCTTATCAAGATCTCTTAATTTCCACGAGCGGTCGTGA 1158 44.39 MNPEVLSVDENDKLATSKTEKEQNDAPNSKEKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTEGGTMRNVPVGAGRRKNKNSASHYRHITISEALQAAQIDVPNGINHLASKSNGRVLNFSVNAPGCESMATVLNPGERKVLNGTRNEFHRLEDQGIKAPCKGGETGDDCSSASSVTMSSSMEEGARRCPQEPQMQNINGFPPQIPYLPGVPWPCSWNAPIPPPAFCPPGVPLPFYPATYWSCSVPGAWNIPWFTPQPCSPNIGPRSPILGKHPRDGDKLQADNSEMEEPPKQKNGSVLVPKTLRIDDPNEAAKSSIWETLGIKNDSIKAVDLSKVFQSKGDQKRNVSEVLSPVLQANPAALSRSLNFHERS 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 71476903 71480020 - Tan0021034.2 Tan09g2117 764460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2117 385 MobiDBLite consensus disorder prediction 1 37 - -
Tan09g2117 385 MobiDBLite consensus disorder prediction 11 37 - -
Tan09g2117 385 MobiDBLite consensus disorder prediction 170 189 - -
Tan09g2117 385 PANTHER CYCLIC DOF FACTOR 2 9 384 IPR045174 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0006355(InterPro)
Tan09g2117 385 MobiDBLite consensus disorder prediction 284 303 - -
Tan09g2117 385 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan09g2117 385 Pfam Dof domain, zinc finger 38 94 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan09g2117 385 MobiDBLite consensus disorder prediction 278 311 - -
Tan09g2117 385 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2435 Tan-Chr5:75498270 Tan09g2117 Tan-Chr9:71476903 1.00E-107 dispersed
Tan07g1176 Tan-Chr7:42398646 Tan09g2117 Tan-Chr9:71476903 2.10E-104 dispersed
Tan09g2117 Tan-Chr9:71476903 Tan10g1676 Tan-Chr10:37944187 4.70E-56 dispersed
Tan09g2116 Tan-Chr9:71476903 Tan09g2117 Tan-Chr9:71476903 3.00E-230 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28411 PF02701 zf-Dof 1.80E-32 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2117 - - - 0.0