Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2117 ATGAATCCTGAAGTGTTATCAGTAGATGAAAATGATAAGCTCGCAACAAGCAAAACTGAGAAAGAACAGAATGATGCACCCAACTCAAAAGAGAAACTGAAGAAACCAGATAAAATACTTCCATGTCCCCGCTGCAATAGCATGGAAACTAAGTTTTGTTATTACAATAATTATAACGTCAATCAACCACGTCATTTTTGTAAAGCCTGTCAAAGATATTGGACTGAAGGCGGTACCATGAGGAATGTCCCTGTTGGAGCTGGCCGCCGAAAGAACAAGAACTCTGCCTCACACTACCGACACATTACGATCTCAGAGGCTCTTCAAGCTGCACAGATTGATGTTCCCAATGGGATCAACCACCTAGCATCAAAAAGCAATGGCCGAGTCCTCAATTTCAGCGTAAACGCACCTGGATGTGAATCTATGGCCACTGTCCTCAATCCTGGAGAAAGAAAGGTCTTGAATGGAACTAGGAATGAATTTCATAGATTGGAAGACCAAGGAATCAAAGCGCCTTGTAAGGGTGGGGAAACTGGCGACGATTGTTCCAGTGCATCTTCAGTGACAATGTCAAGTTCAATGGAGGAAGGAGCCAGGAGGTGCCCTCAAGAACCACAGATGCAGAACATCAATGGTTTCCCTCCTCAAATCCCATATCTTCCTGGTGTTCCTTGGCCTTGTTCATGGAATGCACCAATACCTCCACCAGCCTTTTGCCCTCCTGGAGTTCCTTTACCATTCTACCCTGCAACATATTGGAGCTGTAGCGTTCCAGGTGCTTGGAATATTCCTTGGTTCACTCCACAACCTTGTTCTCCAAACATTGGTCCGAGATCTCCGATACTCGGGAAGCATCCAAGAGATGGCGACAAACTCCAGGCTGATAATTCTGAGATGGAAGAACCTCCAAAACAGAAAAATGGATCTGTTTTGGTTCCAAAAACTTTAAGGATTGATGATCCGAACGAAGCTGCTAAGAGCTCAATATGGGAGACACTCGGTATTAAGAATGATTCAATCAAAGCTGTTGATCTGTCTAAGGTCTTCCAATCAAAGGGCGATCAAAAGAGAAACGTTTCTGAAGTGTTGTCTCCAGTTTTGCAAGCTAACCCTGCAGCCTTATCAAGATCTCTTAATTTCCACGAGCGGTCGTGA 1158 44.39 MNPEVLSVDENDKLATSKTEKEQNDAPNSKEKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTEGGTMRNVPVGAGRRKNKNSASHYRHITISEALQAAQIDVPNGINHLASKSNGRVLNFSVNAPGCESMATVLNPGERKVLNGTRNEFHRLEDQGIKAPCKGGETGDDCSSASSVTMSSSMEEGARRCPQEPQMQNINGFPPQIPYLPGVPWPCSWNAPIPPPAFCPPGVPLPFYPATYWSCSVPGAWNIPWFTPQPCSPNIGPRSPILGKHPRDGDKLQADNSEMEEPPKQKNGSVLVPKTLRIDDPNEAAKSSIWETLGIKNDSIKAVDLSKVFQSKGDQKRNVSEVLSPVLQANPAALSRSLNFHERS 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 71476903 71480020 - Tan0021034.2 Tan09g2117 764460

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2117 385 MobiDBLite consensus disorder prediction 1 37 - -
Tan09g2117 385 MobiDBLite consensus disorder prediction 11 37 - -
Tan09g2117 385 MobiDBLite consensus disorder prediction 170 189 - -
Tan09g2117 385 PANTHER CYCLIC DOF FACTOR 2 9 384 IPR045174 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0006355(InterPro)
Tan09g2117 385 MobiDBLite consensus disorder prediction 284 303 - -
Tan09g2117 385 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan09g2117 385 Pfam Dof domain, zinc finger 38 94 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan09g2117 385 MobiDBLite consensus disorder prediction 278 311 - -
Tan09g2117 385 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2117 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2435 Tan-Chr5:75498270 Tan09g2117 Tan-Chr9:71476903 1.00E-107 dispersed
Tan07g1176 Tan-Chr7:42398646 Tan09g2117 Tan-Chr9:71476903 2.10E-104 dispersed
Tan09g2117 Tan-Chr9:71476903 Tan10g1676 Tan-Chr10:37944187 4.70E-56 dispersed
Tan09g2116 Tan-Chr9:71476903 Tan09g2117 Tan-Chr9:71476903 3.00E-230 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan03g2576 . 11 159 C2C2-Dof Transcription Factor Family AT1G29160 54.4 3.7e-40 162.2
Tan05g2493 . 18 166 C2C2-Dof Transcription Factor Family AT1G29160 52.6 6.3e-40 161.4
Tan05g2493 . 18 166 C2C2-Dof Transcription Factor Family AT2G34140 52.4 1.2e-40 163.7
Tan03g2576 . 11 159 C2C2-Dof Transcription Factor Family AT2G34140 50.9 1.1e-36 150.6
Tan11g0734 . 1 131 C2C2-Dof Transcription Factor Family AT2G37590 66.0 2.2e-38 157.1
Tan09g2117 . 33 384 C2C2-Dof Transcription Factor Family AT3G47500 52.4 1.9e-88 323.9
Tan01g2463 . 1 138 C2C2-Dof Transcription Factor Family AT5G02460 55.8 1.4e-39 161.4
Tan03g0966 . 1 124 C2C2-Dof Transcription Factor Family AT5G02460 53.6 1.7e-37 154.5
Tan03g0967 . 1 124 C2C2-Dof Transcription Factor Family AT5G02460 53.6 1.7e-37 154.5
Tan03g0966 . 40 145 C2C2-Dof Transcription Factor Family AT3G55370 70.0 7.2e-38 155.6
Tan03g0967 . 40 145 C2C2-Dof Transcription Factor Family AT3G55370 70.0 7.2e-38 155.6
Tan09g2004 . 24 317 C2C2-Dof Transcription Factor Family AT5G60850 52.8 2.1e-46 183.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009303 0 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28411 PF02701 zf-Dof 1.80E-32 No_clan Tan TF