Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2123 ATGGGTGCCAGTGCCACTTTGAGGCCCAAGTGTGAAGAAGTCATGCCCTTTGAAGACCCTTTTCCTTTGTCATGCCATCTTTCTCCTCTCCATTTTAGAAGCTACAATTCTGCATTGGATTGGAACTGCAATAATTTTGGGTTTCAAGAGAGCATTTTTGACGTCGTTCCTTTGTTTGAGAGTTGCCCAAATGACCCTTTTTTCGACCCGAAGGATATTGAACCCGTTAACTCCTTTATACCAGAAGATGGGGTTGGAATTTGGAGTGAAATGGAGGGTGGATTTGGATTTGGGGTTGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAGGAGGCTCTATTATTGCTTGAAGGAATTAGTGGAGATCAAAATGAAAGTAATAATGGATTATTATTATTAGAGAGATCAAAAGAAGGAAGGGGCAAAAGAAAGTGCAGAGAAAGAACCAACAATAATAATGCGAGTCCATCAAAAATGCTGTCAAGAAAAACAATATCTCAGTACTTCTACATGCCCATTACTCAGGCTGCCAAAGAATTGAATGTGGGACTCACTCTTTTGAAGAAAAGATGTAGAGAATTGGGAATTAAGAGATGGCCACATAGGAAGTTGATGAGCCTCCAAACCCTAATCAAGAATGTCAAGGAGCTTAAAAAGGGAGATGGAGAGGGAAATGGAGTGAAGTTAAACAATGTATTGGAGATATTAGAGAATGAGAAGAAGTTAATGGAGGAGAGACCCGATTTGCAGTTAGAGGACAATACAAAGAGGCTTAGACAAGCCTGCTTCAAGGCAAACTACAAGAAAAGAAAGCTGTCAGGAATCAACAATTTCCAATTTTTCTCCCAAGAAGAAGAATTAGAAGAAGATGAAGAAATGAAATATCTGTTGTCGGATTGCTCCTTTTCGTCCACTAGCTGCACCCTGTTCATGTAA 939 40.36 MGASATLRPKCEEVMPFEDPFPLSCHLSPLHFRSYNSALDWNCNNFGFQESIFDVVPLFESCPNDPFFDPKDIEPVNSFIPEDGVGIWSEMEGGFGFGVEEEEEEEEEEEEEALLLLEGISGDQNESNNGLLLLERSKEGRGKRKCRERTNNNNASPSKMLSRKTISQYFYMPITQAAKELNVGLTLLKKRCRELGIKRWPHRKLMSLQTLIKNVKELKKGDGEGNGVKLNNVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLSGINNFQFFSQEEELEEDEEMKYLLSDCSFSSTSCTLFM 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 71503980 71505255 - Tan0018882.1 Tan09g2123 764466

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2123 312 Coils Coil 99 119 - -
Tan09g2123 312 PANTHER PROTEIN RKD4 147 275 IPR044607 GO:0003700(InterPro)
Tan09g2123 312 Coils Coil 227 247 - -
Tan09g2123 312 Pfam RWP-RK domain 161 208 IPR003035 -
Tan09g2123 312 ProSiteProfiles RWP-RK domain profile. 137 229 IPR003035 -
Tan09g2123 312 MobiDBLite consensus disorder prediction 138 159 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2123 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0086 Tan-Chr1:957421 Tan09g2123 Tan-Chr9:71503980 1.50E-29 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan09g2123 . 143 277 AtRKD Transcription Factor Family AT1G18790 69.6 4.2e-43 172.6
Tan09g2123 . 161 305 AtRKD Transcription Factor Family AT1G74480 59.3 1.9e-41 167.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002327 1 2 1 3 2 2 3 2 2 4 1 2 2 4 2 2 2 2 2 2 1 2 2 2 2 1 2 3 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28412 PF02042 RWP-RK 1.60E-21 No_clan Tan TF