Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2157 ATGGAGGCTGAAGCTTTGCCAACCACAGATGATAGAGTTCAATCAACTGGAGGAGATCATGAAGAACCTGCTGCCAAACAAAATGCTCTTCACAAGGTCCCTTTTATGGCTGACTTGGAAAAGGCCTCTATGGAACCCCTCTCAGTCGCATCAGCTTCTTCAACTTGGAAGGAAGAGGATGATGTTCAGCATGAACAAAGAATGAAAATGGCGAAAGTTGAAATGAGTAAAGTGAGAGAAGAAAACGAGAGGCTAAAGAAGTGTTTGGATGAAATGATGAAGGATTACGAGAGCCTAAAAAGGCAGTTCCATGAGATGATGATGATGAGTCAAAAAGAAGGAAAAAAATCAACACAAACAAGTGGAAGTACCATTATTAATAATAATAATAATAATAAGGAGGAGGAGGAGGTTGAAGAAGTTGACGACATGGTTTCACTCACATTGGGAAGATTCTCAAGCGATGATCAAAACAAGATCAACGTCAGTACTTCTTCTGAAAAAAAATTAGATCATCAAAACAAAATGTTGGACCTGAAACAACATTATTATTGGGGCTCTCTTGGAGTACTTGGTGAAACAAATAATATCAAAACCCCATCAATGGATCACATTCAAACTCCATCGGACAGTGAACCTAAAGAAGAAGAAGAAGAAGCCGGACAGACTTGGCCACCGAGTAAGGTGTTCAAGGGTATGCCGCCGCCGCCGCCACCACCCGGAGAAGATGAAGTTTCTCACCAGAATCCCCCCAAGAAAGCTAGGGTTTGTGTGAGAGCTCGTTGTGATACTCCAACGTTGAACGATGGATGTCAATGGAGAAAATATGGACAAAAAATTGCAAAAGGAAATCCTTGTCCTAGAGCTTATTATCGTTGCACCGGTGCACCCTCATGTCCAGTTAGGAAACAAGTGCAGAGGAGTGTTGATGATATTTCAATACTAATCACCACCTATGAAGGAACTCACAACCACCCTCTGCCTGTTTCAGCCATGGCCATGGCTTCCACCACCTCTGCCGCCGCCTCGATGCTCCTCTCAGGCCCTTCCTCCTCCACGTCTCGGGCGATCGGGACCGCAGCTGCGAATCTCCATGGAATGAACTTATATCTCTCAAACAACACCATTAATTCAAAGCAATTCTACTTGCCAAACTCTTCAATGCTATCTTCTTCTCTAAACCATCCCACAATCACCTTAGACCTCACTTCAAACGTTAACCCTCCATCAACTAATTCCTCCTCCTCTCCTTTCCATAAAATCCCTTCAACTTATCCTCCAAAATATCCCTTCACCAGCCTTGATTTTGGCTCTTCTCAACACAACTTCATGTCTTGGAACAACAATAATATTAGTGGCTATAACAATAATAATAATCAACCTTATAATAATATAACCAAAAATGCAATAGGAATATCGTCATCAGACCTTGCTAAACAACTCCCTCTCCATAGTAACATCTATCAAGCCTGCCTTCAACAATTTGCCAAACCTTCAACTCCGGACACAATAGCGGCAGCAACCAAGGCAATTACGTCGGACCCGAGTTTCCAATCGGCATTGGCGGCTGCCCTCAGCTCGATCATCGGCAGCGGCGAGGCGATTCAGTCCATGTCTAGCTATGTTCAAGCAACACAGGGAAATGTGTGTGCATCAAGTTTAAGCTCTCAACAAGCAAGTATGGGGTTTCAGGCACCTCCATCATTGACATGCTCCACCTCCACCTCCAAGAGTACTCCTTCTTCGTCTCCTGGTGATAGTAGAGACAACGCCAACTGA 1779 43.84 MEAEALPTTDDRVQSTGGDHEEPAAKQNALHKVPFMADLEKASMEPLSVASASSTWKEEDDVQHEQRMKMAKVEMSKVREENERLKKCLDEMMKDYESLKRQFHEMMMMSQKEGKKSTQTSGSTIINNNNNNKEEEEVEEVDDMVSLTLGRFSSDDQNKINVSTSSEKKLDHQNKMLDLKQHYYWGSLGVLGETNNIKTPSMDHIQTPSDSEPKEEEEEAGQTWPPSKVFKGMPPPPPPPGEDEVSHQNPPKKARVCVRARCDTPTLNDGCQWRKYGQKIAKGNPCPRAYYRCTGAPSCPVRKQVQRSVDDISILITTYEGTHNHPLPVSAMAMASTTSAAASMLLSGPSSSTSRAIGTAAANLHGMNLYLSNNTINSKQFYLPNSSMLSSSLNHPTITLDLTSNVNPPSTNSSSSPFHKIPSTYPPKYPFTSLDFGSSQHNFMSWNNNNISGYNNNNNQPYNNITKNAIGISSSDLAKQLPLHSNIYQACLQQFAKPSTPDTIAAATKAITSDPSFQSALAAALSSIIGSGEAIQSMSSYVQATQGNVCASSLSSQQASMGFQAPPSLTCSTSTSKSTPSSSPGDSRDNAN 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 71677977 71682495 - Tan0013876.1 Tan09g2157 764500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2157 592 Gene3D WRKY domain 252 329 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan09g2157 592 MobiDBLite consensus disorder prediction 1 31 - -
Tan09g2157 592 Coils Coil 68 102 - -
Tan09g2157 592 ProSiteProfiles WRKY domain profile. 262 328 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan09g2157 592 MobiDBLite consensus disorder prediction 114 131 - -
Tan09g2157 592 MobiDBLite consensus disorder prediction 229 245 - -
Tan09g2157 592 SMART WRKY_cls 267 327 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan09g2157 592 FunFam probable WRKY transcription factor 31 252 329 - -
Tan09g2157 592 Pfam WRKY DNA -binding domain 268 326 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan09g2157 592 MobiDBLite consensus disorder prediction 114 138 - -
Tan09g2157 592 MobiDBLite consensus disorder prediction 561 592 - -
Tan09g2157 592 MobiDBLite consensus disorder prediction 196 252 - -
Tan09g2157 592 SUPERFAMILY WRKY DNA-binding domain 260 328 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan09g2157 592 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 54 533 IPR044810 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0729 Tan-Chr1:6908472 Tan09g2157 Tan-Chr9:71677977 1.70E-42 dispersed
Tan04g2505 Tan-Chr4:83951777 Tan09g2157 Tan-Chr9:71677977 1.40E-22 dispersed
Tan09g2157 Tan-Chr9:71677977 Tan11g0459 Tan-Chr11:3714800 4.10E-19 dispersed
Tan09g2157 Tan-Chr9:71677977 Tan09g2158 Tan-Chr9:71677977 5.90E-276 tandem
Tan02g0355 Tan-Chr2:3055217 Tan09g2157 Tan-Chr9:71677977 3.30E-44 transposed
Tan03g2288 Tan-Chr3:77077856 Tan09g2157 Tan-Chr9:71677977 9.40E-43 transposed
Tan05g2089 Tan-Chr5:71364311 Tan09g2157 Tan-Chr9:71677977 3.20E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28418 PF03106 WRKY 1.10E-23 CL0274 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2157 - - - 0.0