Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan09g2179 | ATGGATCCTCCACTCGTCAATGAATCTTCTTTCTCCGCTGCGAATCCCTCTTCTTACAGCTTGGCCGCGATTTGGCCTTTCGTGGGGGAGCAGGGCGGGAGCGCATTGGGGCTTCGAATGGCTAATTTGGGTCAGAATCTTGGTGGGTTTCCTGAGAGCTCCACGAATCGCGATGGATCAATGGAGGAATCGACAGTGACGGAGCAGAGTGGCGGTGGGAGGAAGAGGAAGGATGTGAGCTCTGAGGATGAATCTTCGAGAATGGTTTCCACTAGTAGTGCTAATCAATTGAGTAACTCAAATGGTAAACGGATGAAAGTAGTGGAACCCAGAGATGAAAATGGTGGTATAAAAGCTGAAGGCGAACCTAACTCAGCAGATGGCAAGAAGCTGACCGAGCAAAGCCCAAAACCTTCTGAACCACCAAAAGATTACATCCATGTGAGAGCGAGAAGGGGCCAAGCTACTGATAGCCATAGTTTAGCAGAAAGAGCAAGAAGAGAGAAGATCAGTGAAAGAATGAAAATTTTGCAGGACTTGGTTCCAGGTTGTAACAAGGTCATTGGAAAAGCACTGGTCCTTGATGAGATAATAAATTATATCCAGTCATTGCAACGTCAAGTCGAGTTCCTCTCCATGAAGCTTGAAGCTGTGAATTCCAGGATGAACATGAACCCTGGAATAGAAGCTCTTACCGTAAAAAATATTGTTAATCAACCATATGATGCAGCTGGAATATTATATGGTTCACAAGCAGCAAGAGAATATAGCCAAGGTGCACAACCCGAATGGTTGCATATGCAGATTGGTGGAGGTTTTGAAAGAACATCGTAG | 834 | 45.56 | MDPPLVNESSFSAANPSSYSLAAIWPFVGEQGGSALGLRMANLGQNLGGFPESSTNRDGSMEESTVTEQSGGGRKRKDVSSEDESSRMVSTSSANQLSNSNGKRMKVVEPRDENGGIKAEGEPNSADGKKLTEQSPKPSEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNMNPGIEALTVKNIVNQPYDAAGILYGSQAAREYSQGAQPEWLHMQIGGGFERTS | 277 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 71866654 | 71870689 | + | Tan0022100.1 | Tan09g2179 | 764522 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan09g2179 | 277 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 57 | 225 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Tan09g2179 | 277 | Pfam | Helix-loop-helix DNA-binding domain | 158 | 205 | IPR011598 | GO:0046983(InterPro) | |
Tan09g2179 | 277 | MobiDBLite | consensus disorder prediction | 69 | 84 | - | - | |
Tan09g2179 | 277 | MobiDBLite | consensus disorder prediction | 47 | 68 | - | - | |
Tan09g2179 | 277 | SMART | finulus | 160 | 210 | IPR011598 | GO:0046983(InterPro) | |
Tan09g2179 | 277 | MobiDBLite | consensus disorder prediction | 105 | 144 | - | - | |
Tan09g2179 | 277 | Gene3D | - | 151 | 229 | IPR036638 | GO:0046983(InterPro) | |
Tan09g2179 | 277 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 152 | 224 | IPR036638 | GO:0046983(InterPro) | |
Tan09g2179 | 277 | MobiDBLite | consensus disorder prediction | 85 | 103 | - | - | |
Tan09g2179 | 277 | Coils | Coil | 201 | 221 | - | - | |
Tan09g2179 | 277 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 154 | 204 | IPR011598 | GO:0046983(InterPro) | |
Tan09g2179 | 277 | FunFam | Basic helix-loop-helix transcription factor | 151 | 224 | - | - | |
Tan09g2179 | 277 | CDD | bHLH_AtBPE_like | 144 | 226 | - | - | |
Tan09g2179 | 277 | MobiDBLite | consensus disorder prediction | 47 | 144 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g2788 | Tan-Chr1:52794623 | Tan09g2179 | Tan-Chr9:71866654 | 5.60E-73 | dispersed | |
Tan09g2179 | Tan-Chr9:71866654 | Tan10g1178 | Tan-Chr10:11869697 | 1.30E-39 | dispersed | |
Tan09g2179 | Tan-Chr9:71866654 | Tan09g2180 | Tan-Chr9:71866654 | 2.50E-123 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28422 | PF00010 | HLH | 2.20E-08 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan09g2179 | - | - | - | 0.0 |