Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2180 ATGGATCCTCCACTCGTCAATGAATCTTCTTTCTCCGCTGCGAATCCCTCTTCTTACAGCTTGGCCGCGATTTGGCCTTTCGTGGGGGAGCAGGGCGGGAGCGCATTGGGGCTTCGAATGGCTAATTTGGGTCAGAATCTTGGTGGGTTTCCTGAGAGCTCCACGAATCGCGATGGATCAATGGAGGAATCGACAGTGACGGAGCAGAGTGGCGGTGGGAGGAAGAGGAAGGATGTGAGCTCTGAGGATGAATCTTCGAGAATGGTTTCCACTAGTAGTGCTAATCAATTGAGTAACTCAAATGGTAAACGGATGAAAGTAGTGGAACCCAGAGATGAAAATGGTGGTATAAAAGCTGAAGGCGAACCTAACTCAGCAGATGGCAAGAAGCTGACCGAGCAAAGCCCAAAACCTTCTGAACCACCAAAAGATTACATCCATGTGAGAGCGAGAAGGGGCCAAGCTACTGATAGCCATAGTTTAGCAGAAAGAGCAAGAAGAGAGAAGATCAGTGAAAGAATGAAAATTTTGCAGGACTTGGTTCCAGGTTGTAACAAGGTCATTGGAAAAGCACTGGTCCTTGATGAGATAATAAATTATATCCAGTCATTGCAACGTCAAGTCGAGTTCCTCTCCATGAAGCTTGAAGCTGTGAATTCCAGGATGAACATGAACCCTGGAATAGAAGCTCTTACCGTAAAAAATGTAAGTCTGATTCTCATTTCCTTTCATGTATCAAGAGAAAAATAA 750 45.47 MDPPLVNESSFSAANPSSYSLAAIWPFVGEQGGSALGLRMANLGQNLGGFPESSTNRDGSMEESTVTEQSGGGRKRKDVSSEDESSRMVSTSSANQLSNSNGKRMKVVEPRDENGGIKAEGEPNSADGKKLTEQSPKPSEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNMNPGIEALTVKNVSLILISFHVSREK 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 71866654 71869426 + Tan0022100.2 Tan09g2180 764523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2180 249 MobiDBLite consensus disorder prediction 69 84 - -
Tan09g2180 249 MobiDBLite consensus disorder prediction 47 68 - -
Tan09g2180 249 SMART finulus 160 210 IPR011598 GO:0046983(InterPro)
Tan09g2180 249 MobiDBLite consensus disorder prediction 105 144 - -
Tan09g2180 249 MobiDBLite consensus disorder prediction 85 103 - -
Tan09g2180 249 Gene3D - 151 228 IPR036638 GO:0046983(InterPro)
Tan09g2180 249 FunFam Basic helix-loop-helix transcription factor 151 224 - -
Tan09g2180 249 MobiDBLite consensus disorder prediction 43 144 - -
Tan09g2180 249 Coils Coil 201 221 - -
Tan09g2180 249 Pfam Helix-loop-helix DNA-binding domain 158 205 IPR011598 GO:0046983(InterPro)
Tan09g2180 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 204 IPR011598 GO:0046983(InterPro)
Tan09g2180 249 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 56 225 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Tan09g2180 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 224 IPR036638 GO:0046983(InterPro)
Tan09g2180 249 CDD bHLH_AtBPE_like 144 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g2180 Tan-Chr9:71866654 Tan10g1181 Tan-Chr10:11869697 4.90E-38 dispersed
Tan09g2179 Tan-Chr9:71866654 Tan09g2180 Tan-Chr9:71866654 2.50E-123 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28423 PF00010 HLH 1.90E-08 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2180 - - - 0.0