Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan09g2230 | ATGCTGTCAAGTTCTTGCTTGAGTTTGTTAGAGCTATCATCTGCGGATATGTTGGATTTTCCTCCTACACCAAGATCCGTGCCACGGGTGATGACTGCCTCGGGTATATTTTCCGATAAGGACAGAGATTCGGAAGTTTCCCCCTCTAAATGTCGAGGGAGAAAAATAATAGTGGCGAATTTTCTTCCTCTTCATGCTAAAAAGGATCCAGATTCTGGAAGATGGAACTTCAGTTTTGATGAGGATTCACTTCTGCTTCAGCTGAAGGATGGATTTTCATCAGATGTAGATGTTATATATGTTGGATCGTTGAAGGTTGACGTCGATGTCCGAGAGCAAGAAGAGGTTTCACAGAAACTACTGGAGGAATTCAACTGTGCACCTACTTTCATCCCCACGTCCCTTCAGAAACAGTTTTATCATGGATTCTGCAAACAACATTTGTGGCCTCTTTTTCATTACATGATGCCGATTTCCCCTTATCATGGCTCTCGCTTTGATCGACGTCTTTGGCATGCATATCTTTCAGCCAACAAAAGGTTTGCAGATAAAGTTATGGAGGTAATCAATCTGGAAGAAGATTATGTCTGGATTCATGACTACCACCTTATGGTTCTCCCTACTTTTTTGAGAAAGCGTTACAGTCGAATTAAGCTTGGATTTTTCCTTCATAGTCTGTTTCCCTCATCAGAAATCTATCGAACTCTGCCTGTTAGAGATGAGATTCTGAAAGCATTACTTAACACAGACCTAATCGGTTTCCATACATTCGATTATGCTCGCCACTTCCTATCTTGTTGTAGTAGACTGCTTGGTCTGGAGTATGAATCTAAACGAGGCTATCTCACGCTCGAGTATTTTGGCCGTACAATATACATTAAGATTTTGCCTGTTGGAGTTCATATGGGACGACTTGAATTTGCATTAAATCAGCCCCAAACTTCAATCAAGGCTAAGGAAATCAAAGAAAATCTCAAAGGAAAGAAGCTTATTCTTGGTGTTGATGACATGGACATATTTAAAGGTATAGGTCTCAAGTTATTAGCTATGGAACAGCTCTTGAACCAGCATCCAGAGTTACGAGGCAATGTTGTTCTGGTGCAAATTCTAAATCCGGCACGGAGCAACGGCAATGATGTCCTGGAAGCAAAAAGGGAAACTTATGAGATAACCAAAAGGATTAACAAGGTTTTTGGCTTTCCGGGATATGAACCTGTAATCTTGATTGATCATCCTATTCCTCCTCATGAGAAGATTGCATATTATGTATTAGCAGAGTGCTGCATTGTAAATGCCCTCAGGGATGGTATGAACTTAGTTCCATACGAGTACATTGTTTGTCGACAGGGTACTTCGCAAATGGATGAAGTCTTGGAAGTCTCCCCGAATTCACCTCGTACCAGCACGATTGTCGTGTCAGAATTCATAGGCTGTTCACCATCTCTAAGTGGTGCAGTCAGGGTAAACCCCTGGGATTTTGATGCTGTAGCTGATGCACTTTATGCAGCTGTTGCAATGCCTGCTTTAGAGAAGCAACTGAGGCATGAAAAGCATTACCGATACGTTAGTTCTCACGATGTTGCTTATTGGGCTCGTAGTTTCTCGCAAGATTTGGAGCGAGCATGCCGAGATCACTACAGTAAACGTTGCTGGGGCATTGGACTTGGTTTAGGTTTCAGAATTTTGTCACTTTCTCCAAGTTTCAGGAAGCTTTCCATTGAACATATTGGCTCTGCATATAGGAGTGCTTCTAGGAGGGCGATATTTTTGGATTACGACGGGACTGTGGTTTCCCAAGCTTCGTTAGTCAAATCCCCGACACCTGAAGTCATTTCTATCCTCAACAACCTCTGCACAGACTCAAAAAACACTGTGTTTATAGTTAGTGGCAGGGGGAAAGATTCTCTCGGTTCATGGTTCGGTTCGTGTAAGAATCTCGGTATTGCCGCTGAACATGGATACTATTTGAGGTGGAATAGGGACTCTGAATGGGAAGTTAGTACATTAGCTGAAAACTTTGGTTGGAAAAGGATTGCTGAACCTGTGATGAAACTATATACCGAGGCAACCGATGGCTCATACATAGAGGCCAAGGACAGTGCCTTAGTATGGCATCATCAAGACGCTGATTCTTATTTCGGTTCATGCCAGGCCATGGAGCTCTTAGATCACCTTGAAAATGTCCTTGCTAACGAACCCGTAGTCGTCAAAAGAGGCCAGCAGATCGTCGAAGTGAAACCACAGGGTGTGACTAAAGGATTAGTTGCTGAAAAAGTTCTTTACACAATGATCAGCTCTGATAAAGCACCTGACTTTGTGATGTGCATTGGAGATGATCGATCCGACGAAGACATGTTCGAAAGCATATCGAGTAGAAGCTATAGCTCATCCCTTGCTACTCCCCCAAAGATCTTTGCCTGTACGGTGGGGCAAAAGCCTAGCAAAGCCAAATACTATTTAGACGATACCGCCGACGTTTTGACCTTACTTCAAAGCCTGGCCACCTCTACTAGCCGTAAATCGAGGTCAAGTTTTGAAACTCGTGTTTTGTTCGAGGATGATGTTTGA | 2568 | 42.99 | MLSSSCLSLLELSSADMLDFPPTPRSVPRVMTASGIFSDKDRDSEVSPSKCRGRKIIVANFLPLHAKKDPDSGRWNFSFDEDSLLLQLKDGFSSDVDVIYVGSLKVDVDVREQEEVSQKLLEEFNCAPTFIPTSLQKQFYHGFCKQHLWPLFHYMMPISPYHGSRFDRRLWHAYLSANKRFADKVMEVINLEEDYVWIHDYHLMVLPTFLRKRYSRIKLGFFLHSLFPSSEIYRTLPVRDEILKALLNTDLIGFHTFDYARHFLSCCSRLLGLEYESKRGYLTLEYFGRTIYIKILPVGVHMGRLEFALNQPQTSIKAKEIKENLKGKKLILGVDDMDIFKGIGLKLLAMEQLLNQHPELRGNVVLVQILNPARSNGNDVLEAKRETYEITKRINKVFGFPGYEPVILIDHPIPPHEKIAYYVLAECCIVNALRDGMNLVPYEYIVCRQGTSQMDEVLEVSPNSPRTSTIVVSEFIGCSPSLSGAVRVNPWDFDAVADALYAAVAMPALEKQLRHEKHYRYVSSHDVAYWARSFSQDLERACRDHYSKRCWGIGLGLGFRILSLSPSFRKLSIEHIGSAYRSASRRAIFLDYDGTVVSQASLVKSPTPEVISILNNLCTDSKNTVFIVSGRGKDSLGSWFGSCKNLGIAAEHGYYLRWNRDSEWEVSTLAENFGWKRIAEPVMKLYTEATDGSYIEAKDSALVWHHQDADSYFGSCQAMELLDHLENVLANEPVVVKRGQQIVEVKPQGVTKGLVAEKVLYTMISSDKAPDFVMCIGDDRSDEDMFESISSRSYSSSLATPPKIFACTVGQKPSKAKYYLDDTADVLTLLQSLATSTSRKSRSSFETRVLFEDDV | 855 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 72247966 | 72253329 | - | Tan0021939.3 | Tan09g2230 | 764573 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan09g2230 | 855 | CDD | HAD_TPP | 587 | 826 | - | - | |
| Tan09g2230 | 855 | CDD | GT20_TPS | 54 | 539 | IPR001830 | GO:0003824(InterPro)|GO:0005992(InterPro) | |
| Tan09g2230 | 855 | SUPERFAMILY | HAD-like | 586 | 834 | IPR036412 | - | |
| Tan09g2230 | 855 | Gene3D | Glycogen Phosphorylase B; | 48 | 306 | - | - | |
| Tan09g2230 | 855 | FunFam | alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 | 47 | 306 | - | - | |
| Tan09g2230 | 855 | Pfam | Glycosyltransferase family 20 | 54 | 539 | IPR001830 | GO:0003824(InterPro)|GO:0005992(InterPro) | |
| Tan09g2230 | 855 | FunFam | Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 | 715 | 846 | - | - | |
| Tan09g2230 | 855 | FunFam | alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 | 585 | 702 | - | - | |
| Tan09g2230 | 855 | NCBIfam | trehalose-phosphatase | 583 | 834 | IPR003337 | GO:0005992(InterPro) | |
| Tan09g2230 | 855 | Gene3D | - | 585 | 713 | IPR023214 | - | |
| Tan09g2230 | 855 | Gene3D | - | 714 | 848 | IPR023214 | - | |
| Tan09g2230 | 855 | NCBIfam | HAD-IIB family hydrolase | 587 | 788 | IPR006379 | - | |
| Tan09g2230 | 855 | FunFam | Alpha,alpha-trehalose-phosphate synthase | 308 | 523 | - | - | |
| Tan09g2230 | 855 | Gene3D | Glycogen Phosphorylase B; | 307 | 523 | - | - | |
| Tan09g2230 | 855 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 54 | 543 | - | - | |
| Tan09g2230 | 855 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 24 | 835 | IPR001830 | GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(InterPro)|GO:0005992(PANTHER)|GO:0070413(PANTHER) | |
| Tan09g2230 | 855 | Pfam | Trehalose-phosphatase | 589 | 823 | IPR003337 | GO:0005992(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan09g2228 | Tan-Chr9:72247966 | Tan09g2230 | Tan-Chr9:72247966 | 0.00E+00 | dispersed | |
| Tan09g2229 | Tan-Chr9:72247966 | Tan09g2230 | Tan-Chr9:72247966 | 0.00E+00 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan09g2230 | K16055 | - | csv:101209676 | 1595.1 |