Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan09g2236 | ATGGCTGCTCGAGGTGTCGATTTCAAGTGGTACGACGGGTTTTTCTTGTCGATGCTCGCGACTAGTGTAGTAATAGTTTCGATCAATTGGAAGAGGTATCATACTTGTATACATCCCTTGCATATATGGATTGTGGTTGATTACACTACCGTCTTTGTTTTCCGCCTGCTGATGTTTGTAGATAATGGACTTGCTGCTGGAATGGGTTTAGACTTTGGGTGGCAGCAGAGGTATGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCAGTCCTTGCGCTTCTGCTATATCCATTCCTTTGGGCTTGGACTGCCATTGGTACTGTATGGTTTAGAGAGGCCCATAAATGTCTTCCTGAGCAAGGTCAGAAATGGGGATTCCTAATTTGGTTGCTTTTTAGCTACTGTGCCCTTGTATGCATTGCTTGCATGTCATTGGGAAAGTGGTTAACTCGTAGACAAGCACTCTTGTTTCGGGCGCAACAAGGGATCCCTGTATCAGAATATGGGGTCTTGGTTGACATGATCCGAGTACCTGATTGGGCTTTTGAAGCTGCAGGAATAGAAACAAGAGTAATGGGCCAAGATGCTGCTATATACCATCCCCATCCCGGACTTTACTTGACTCCAGCTCAGAGGGAAGCTGTGGAGGCACTTATTGAGGAACTTCCCAAATTCATGTTAAAGGCTGTTCCAACAGATTGCAGTGAATGTCCTATCTGCTTAGAAGAGTTCCATGTAGGGAATGAGGTTCGTGGCCTCCCTTGTGCTCATAATTTCCATGTAGGATGTATTGACGAGTGGCTTCGACTGAATGTGAAATGCCCTAGATGTCGCTGCTCGGTCTTCCCAAACCTTGACCTCAGTGCTCTGTCCAATCTTCGTTCTGATACTGATAGGCCTTCTGCAAGTGTTGTTATGACCAATCGTTATATAAGATCCCATCCTTTGAGCCAAAGTTATCTGGTGAGATTACAGGGTCTGCTTCGACCTGTTCGCACAGAAAACACTGGTACGCATGGTGATTTAGAGTCTGCTAGTGCTTTTGAAGCTGCTGAGAATGCTGACAACGGGTCTGCCCATGACCAAACTATACCAGAACGGTCTCCCATAAGACCCATGTCTTTGAGTCAGTCCACATCACAACTCTAG | 1149 | 45.87 | MAARGVDFKWYDGFFLSMLATSVVIVSINWKRYHTCIHPLHIWIVVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSVLALLLYPFLWAWTAIGTVWFREAHKCLPEQGQKWGFLIWLLFSYCALVCIACMSLGKWLTRRQALLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGIETRVMGQDAAIYHPHPGLYLTPAQREAVEALIEELPKFMLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRSDTDRPSASVVMTNRYIRSHPLSQSYLVRLQGLLRPVRTENTGTHGDLESASAFEAAENADNGSAHDQTIPERSPIRPMSLSQSTSQL | 382 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 72350026 | 72355203 | + | Tan0004034.1 | Tan09g2236 | 764579 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan09g2236 | 382 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SIS3 | 1 | 359 | IPR044793 | GO:0004842(InterPro)|GO:0010182(InterPro) | |
| Tan09g2236 | 382 | Pfam | Ring finger domain | 236 | 278 | IPR001841 | - | |
| Tan09g2236 | 382 | SMART | ring_2 | 237 | 277 | IPR001841 | - | |
| Tan09g2236 | 382 | MobiDBLite | consensus disorder prediction | 351 | 382 | - | - | |
| Tan09g2236 | 382 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 206 | 283 | IPR013083 | - | |
| Tan09g2236 | 382 | SUPERFAMILY | RING/U-box | 219 | 286 | - | - | |
| Tan09g2236 | 382 | ProSiteProfiles | Zinc finger RING-type profile. | 237 | 278 | IPR001841 | - | |
| Tan09g2236 | 382 | MobiDBLite | consensus disorder prediction | 356 | 382 | - | - | |
| Tan09g2236 | 382 | FunFam | E3 ubiquitin-protein ligase SIS3 | 205 | 283 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan09g1507 | Tan-Chr9:67096335 | Tan09g2236 | Tan-Chr9:72350026 | 3.70E-08 | dispersed | |
| Tan09g1508 | Tan-Chr9:67097922 | Tan09g2236 | Tan-Chr9:72350026 | 3.70E-08 | dispersed | |
| Tan09g2236 | Tan-Chr9:72350026 | Tan09g2238 | Tan-Chr9:72350026 | 1.60E-194 | dispersed | |
| Tan09g2236 | Tan-Chr9:72350026 | Tan09g2237 | Tan-Chr9:72350026 | 1.60E-194 | tandem | |
| Tan05g2019 | Tan-Chr5:70171639 | Tan09g2236 | Tan-Chr9:72350026 | 2.40E-131 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan09g2236 | K16284 | - | csv:101208939 | 724.546 |