Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2237 ATGTTTGTAGATAATGGACTTGCTGCTGGAATGGGTTTAGACTTTGGGTGGCAGCAGAGGTATGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCAGTCCTTGCGCTTCTGCTATATCCATTCCTTTGGGCTTGGACTGCCATTGGTACTGTATGGTTTAGAGAGGCCCATAAATGTCTTCCTGAGCAAGGTCAGAAATGGGGATTCCTAATTTGGTTGCTTTTTAGCTACTGTGCCCTTGTATGCATTGCTTGCATGTCATTGGGAAAGTGGTTAACTCGTAGACAAGCACTCTTGTTTCGGGCGCAACAAGGGATCCCTGTATCAGAATATGGGGTCTTGGTTGACATGATCCGAGTACCTGATTGGGCTTTTGAAGCTGCAGGAATAGAAACAAGAGTAATGGGCCAAGATGCTGCTATATACCATCCCCATCCCGGACTTTACTTGACTCCAGCTCAGAGGGAAGCTGTGGAGGCACTTATTGAGGAACTTCCCAAATTCATGTTAAAGGCTGTTCCAACAGATTGCAGTGAATGTCCTATCTGCTTAGAAGAGTTCCATGTAGGGAATGAGGTTCGTGGCCTCCCTTGTGCTCATAATTTCCATGTAGGATGTATTGACGAGTGGCTTCGACTGAATGTGAAATGCCCTAGATGTCGCTGCTCGGTCTTCCCAAACCTTGACCTCAGTGCTCTGTCCAATCTTCGTTCTGATACTGATAGGCCTTCTGCAAGTGTTGTTATGACCAATCGTTATATAAGATCCCATCCTTTGAGCCAAAGTTATCTGGTGAGATTACAGGGTCTGCTTCGACCTGTTCGCACAGAAAACACTGGTACGCATGGTGATTTAGAGTCTGCTAGTGCTTTTGAAGCTGCTGAGAATGCTGACAACGGGTCTGCCCATGACCAAACTATACCAGAACGGTCTCCCATAAGACCCATGTCTTTGAGTCAGTCCACATCACAACTCTAG 978 46.22 MFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSVLALLLYPFLWAWTAIGTVWFREAHKCLPEQGQKWGFLIWLLFSYCALVCIACMSLGKWLTRRQALLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGIETRVMGQDAAIYHPHPGLYLTPAQREAVEALIEELPKFMLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRSDTDRPSASVVMTNRYIRSHPLSQSYLVRLQGLLRPVRTENTGTHGDLESASAFEAAENADNGSAHDQTIPERSPIRPMSLSQSTSQL 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 72350026 72355203 + Tan0004034.2 Tan09g2237 764580

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2237 325 MobiDBLite consensus disorder prediction 299 325 - -
Tan09g2237 325 ProSiteProfiles Zinc finger RING-type profile. 180 221 IPR001841 -
Tan09g2237 325 SMART ring_2 180 220 IPR001841 -
Tan09g2237 325 FunFam E3 ubiquitin-protein ligase SIS3 148 226 - -
Tan09g2237 325 Pfam Ring finger domain 179 221 IPR001841 -
Tan09g2237 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 226 IPR013083 -
Tan09g2237 325 SUPERFAMILY RING/U-box 162 229 - -
Tan09g2237 325 MobiDBLite consensus disorder prediction 294 325 - -
Tan09g2237 325 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 302 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2237 K16284 - - csv:101208939 605.134
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2019 Tan-Chr5:70171639 Tan09g2237 Tan-Chr9:72350026 2.60E-125 dispersed
Tan09g2236 Tan-Chr9:72350026 Tan09g2237 Tan-Chr9:72350026 1.60E-194 tandem
Tan09g2237 Tan-Chr9:72350026 Tan09g2238 Tan-Chr9:72350026 8.20E-195 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g735 . . . . Bpe12g00593 . . . . Cmo18g00124 Cma10g00129 Cma11g00101 Car10g00121 Car11g00100 Sed08g0132 Cpe20g00235 . Bhi02g00435 Tan09g2237 Cmetu02g1086 . Hepe09g0195 . . Cla06g01657 Cam06g1842 Cec06g1893 Cco06g1898 Clacu06g1802 . Cre06g2561 . . . Cone19ag0136 . Csa01g00843 Chy12g01273 . . . . . . . . Bma08g00169 . Cmo10g00136 Cmo11g00101 . . Car13g00734 Car18g00155 Cpe09g01032 Cpe18g00841 Bhi08g01598 . . Lac10g0440 . . . Cla01g01293 Cam01g1437 Cec01g1471 Cco01g1455 Clacu01g1360 Cmu01g1265 Cre01g1271 Lsi06g01547 Csa01g00157 Chy02g02573 Cme02g01963
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan06g1608 . 72 561 C3H Transcription Factor Family AT2G31510 77.2 4.1e-230 794.7
Tan06g1609 . 72 496 C3H Transcription Factor Family AT2G31510 79.5 7.7e-213 737.3
Tan08g1189 . 4 376 C3H Transcription Factor Family AT2G31510 73.8 7.8e-173 604.4
Tan06g1608 . 55 517 C3H Transcription Factor Family AT2G31770 59.3 7.6e-169 591.3
Tan06g1609 . 55 496 C3H Transcription Factor Family AT2G31770 58.5 2.5e-159 559.7
Tan08g1189 . 4 350 C3H Transcription Factor Family AT2G31770 54.8 1.5e-111 401.0
Tan06g1608 . 55 524 C3H Transcription Factor Family AT2G31760 57.6 7.5e-166 581.3
Tan06g1609 . 55 497 C3H Transcription Factor Family AT2G31760 57.5 2.4e-156 549.7
Tan08g1189 . 4 335 C3H Transcription Factor Family AT2G31760 55.9 6.2e-112 402.1
Tan03g1266 . 8 170 C3H Transcription Factor Family AT5G06490 53.6 1.7e-46 183.3
Tan03g1266 . 8 170 C3H Transcription Factor Family AT5G06490 53.6 1.7e-46 183.3
Tan11g0412 . 1 226 C3H Transcription Factor Family AT3G02290 62.8 4.2e-76 282.0
Tan11g0414 . 1 226 C3H Transcription Factor Family AT3G02290 62.8 4.2e-76 282.0
Tan11g0413 . 1 182 C3H Transcription Factor Family AT3G02290 56.3 2.2e-48 189.9
Tan11g0415 . 1 182 C3H Transcription Factor Family AT3G02290 56.3 2.2e-48 189.9
Tan09g1394 . 1 306 C3H Transcription Factor Family AT1G11020 75.9 7.3e-135 477.6
Tan09g1395 . 1 306 C3H Transcription Factor Family AT1G11020 75.9 7.3e-135 477.6
Tan04g2886 . 33 192 C3H Transcription Factor Family AT1G50440 75.6 4.3e-68 255.4
Tan04g2888 . 33 192 C3H Transcription Factor Family AT1G50440 75.6 4.3e-68 255.4
Tan04g2887 . 33 166 C3H Transcription Factor Family AT1G50440 86.6 5.6e-68 255.0
Tan03g0105 . 8 368 C3H Transcription Factor Family AT5G08750 62.0 5.0e-124 441.8
Tan03g0106 . 8 368 C3H Transcription Factor Family AT5G08750 62.0 5.0e-124 441.8
Tan03g0107 . 8 368 C3H Transcription Factor Family AT5G08750 62.0 5.0e-124 441.8
Tan03g0108 . 8 368 C3H Transcription Factor Family AT5G08750 62.0 5.0e-124 441.8
Tan03g0109 . 8 368 C3H Transcription Factor Family AT5G08750 62.0 5.0e-124 441.8
Tan03g0110 . 8 368 C3H Transcription Factor Family AT5G08750 62.0 5.0e-124 441.8
Tan01g0497 . 1 426 C3H Transcription Factor Family AT3G16090 72.6 2.4e-169 592.8
Tan10g1759 . 31 185 C3H Transcription Factor Family AT1G22510 68.4 1.6e-58 223.4
Tan11g0412 . 1 225 C3H Transcription Factor Family AT5G38895 56.2 4.1e-72 269.2
Tan11g0414 . 1 225 C3H Transcription Factor Family AT5G38895 56.2 4.1e-72 269.2
Tan02g1923 . 16 227 C3H Transcription Factor Family AT1G19310 67.3 3.6e-80 295.4
Tan03g1430 . 16 225 C3H Transcription Factor Family AT1G19310 61.2 2.0e-70 263.1
Tan10g1759 . 35 185 C3H Transcription Factor Family AT1G72175 68.9 1.3e-54 209.9
Tan02g1467 . 9 194 C3H Transcription Factor Family AT1G26800 53.2 1.7e-49 193.4
Tan10g0227 . 1 189 C3H Transcription Factor Family AT4G00335 51.1 6.2e-49 191.4
Tan10g0229 . 45 233 C3H Transcription Factor Family AT4G00335 51.1 6.2e-49 191.4
Tan10g0230 . 1 189 C3H Transcription Factor Family AT4G00335 51.1 6.2e-49 191.4
Tan10g0228 . 1 184 C3H Transcription Factor Family AT4G00335 51.4 5.8e-47 184.9
Tan10g0231 . 45 228 C3H Transcription Factor Family AT4G00335 51.4 5.8e-47 184.9
Tan10g0232 . 1 184 C3H Transcription Factor Family AT4G00335 51.4 5.8e-47 184.9
Tan03g1920 . 9 323 C3H Transcription Factor Family AT2G22120 84.2 1.9e-160 562.8
Tan09g1939 . 1 389 C3H Transcription Factor Family AT1G18470 77.6 3.0e-181 632.1
Tan09g1940 . 1 389 C3H Transcription Factor Family AT1G18470 77.6 3.0e-181 632.1
Tan11g1944 . 11 389 C3H Transcription Factor Family AT1G18470 64.3 5.2e-141 498.4
Tan11g1945 . 3 274 C3H Transcription Factor Family AT1G18470 64.4 7.6e-100 361.7
Tan11g1946 . 13 249 C3H Transcription Factor Family AT1G18470 63.8 4.5e-84 309.3
Tan11g1826 . 67 300 C3H Transcription Factor Family AT1G68200 50.8 1.6e-51 200.7
Tan06g1608 . 55 517 C3H Transcription Factor Family AT2G31770 59.3 7.6e-169 591.3
Tan06g1609 . 55 496 C3H Transcription Factor Family AT2G31770 58.5 2.5e-159 559.7
Tan08g1189 . 4 350 C3H Transcription Factor Family AT2G31770 54.8 1.5e-111 401.0
Tan06g1608 . 55 524 C3H Transcription Factor Family AT2G31760 57.6 7.5e-166 581.3
Tan06g1609 . 55 497 C3H Transcription Factor Family AT2G31760 57.5 2.4e-156 549.7
Tan08g1189 . 4 335 C3H Transcription Factor Family AT2G31760 55.9 6.2e-112 402.1
Tan01g3212 . 86 331 C3H Transcription Factor Family AT5G55970 66.0 2.5e-95 346.3
Tan03g0105 . 8 368 C3H Transcription Factor Family AT5G63780 58.0 1.6e-117 420.2
Tan03g0106 . 8 368 C3H Transcription Factor Family AT5G63780 58.0 1.6e-117 420.2
Tan03g0107 . 8 368 C3H Transcription Factor Family AT5G63780 58.0 1.6e-117 420.2
Tan03g0108 . 8 368 C3H Transcription Factor Family AT5G63780 58.0 1.6e-117 420.2
Tan03g0109 . 8 368 C3H Transcription Factor Family AT5G63780 58.0 1.6e-117 420.2
Tan03g0110 . 8 368 C3H Transcription Factor Family AT5G63780 58.0 1.6e-117 420.2
Tan08g1518 . 1 424 C3H Transcription Factor Family AT3G58030 54.2 5.3e-112 402.1
Tan01g3212 . 90 396 C3H Transcription Factor Family AT4G26580 63.9 2.0e-111 399.8
Tan10g1839 . 22 167 C3H Transcription Factor Family AT4G10150 52.7 6.3e-43 171.8
Tan06g0571 . 6 252 C3H Transcription Factor Family AT3G63530 50.6 9.4e-66 247.7
Tan03g0676 . 1 467 C3H Transcription Factor Family AT5G01960 70.3 7.5e-172 600.9
Tan04g1456 . 1 483 C3H Transcription Factor Family AT5G01960 58.3 9.6e-151 530.8
Tan05g0994 . 1 155 C3H Transcription Factor Family AT2G04240 58.0 2.5e-43 172.6
Tan05g0995 . 1 155 C3H Transcription Factor Family AT2G04240 58.0 2.5e-43 172.6
Tan05g0996 . 1 155 C3H Transcription Factor Family AT2G04240 58.0 2.5e-43 172.6
Tan02g0512 . 1 149 C3H Transcription Factor Family AT2G04240 57.8 3.4e-40 162.2
Tan02g0513 . 1 149 C3H Transcription Factor Family AT2G04240 57.8 3.4e-40 162.2
Tan07g0793 . 12 243 C3H Transcription Factor Family AT5G19430 54.4 1.1e-64 244.2
Tan01g1029 . 132 581 C3H Transcription Factor Family AT5G45290 51.2 6.8e-101 365.5
Tan07g0793 . 7 243 C3H Transcription Factor Family AT5G12310 53.0 5.7e-58 221.9
Tan09g1762 . 75 366 C3H Transcription Factor Family AT5G05810 52.4 4.1e-74 276.2
Tan11g0240 . 58 216 C3H Transcription Factor Family AT5G05830 66.0 3.0e-57 219.2
Tan08g2063 . 70 230 C3H Transcription Factor Family AT5G05830 62.3 1.2e-53 207.2
Tan03g0855 . 10 156 C3H Transcription Factor Family AT5G05830 59.2 8.4e-44 174.5
Tan08g2306 . 82 228 C3H Transcription Factor Family AT5G05830 51.3 1.3e-36 150.6
Tan08g2309 . 82 228 C3H Transcription Factor Family AT5G05830 51.3 1.3e-36 150.6
Tan11g0412 . 1 226 C3H Transcription Factor Family AT5G15790 60.8 4.7e-75 278.5
Tan11g0414 . 1 226 C3H Transcription Factor Family AT5G15790 60.8 4.7e-75 278.5
Tan11g0413 . 1 182 C3H Transcription Factor Family AT5G15790 54.3 3.7e-48 189.1
Tan11g0415 . 1 182 C3H Transcription Factor Family AT5G15790 54.3 3.7e-48 189.1
Tan11g0201 . 1 272 C3H Transcription Factor Family AT3G55530 79.9 3.5e-114 408.7
Tan06g0938 . 1 275 C3H Transcription Factor Family AT1G63900 75.0 1.5e-117 419.9
Tan10g0440 . 10 393 C3H Transcription Factor Family AT2G44580 52.3 5.7e-118 421.8
Tan02g1923 . 25 150 C3H Transcription Factor Family AT1G74990 59.8 1.7e-40 162.9
Tan03g1430 . 15 150 C3H Transcription Factor Family AT1G74990 54.3 3.0e-37 152.1
Tan01g3515 . 3 314 C3H Transcription Factor Family AT5G20910 63.5 1.0e-109 394.0
Tan01g0497 . 119 419 C3H Transcription Factor Family AT1G65040 69.3 1.6e-110 396.7
Tan03g1430 . 17 227 C3H Transcription Factor Family AT2G23780 62.6 2.7e-75 279.3
Tan02g1923 . 6 229 C3H Transcription Factor Family AT2G23780 57.4 4.9e-69 258.5
Tan08g1266 . 1 311 C3H Transcription Factor Family AT3G10810 54.8 1.1e-78 291.6
Tan07g1616 . 1 170 C3H Transcription Factor Family AT1G63840 59.0 1.9e-46 183.0
Tan06g2001 . 1 151 C3H Transcription Factor Family AT1G63840 50.6 2.7e-40 162.5
Tan11g1776 . 8 346 C3H Transcription Factor Family AT1G68070 65.3 1.5e-117 420.2
Tan11g1777 . 8 264 C3H Transcription Factor Family AT1G68070 59.9 6.9e-75 278.5
Tan01g5135 . 4 181 C3H Transcription Factor Family AT1G76410 57.1 7.6e-52 201.1
Tan08g2273 . 9 163 C3H Transcription Factor Family AT1G76410 59.3 8.1e-46 181.0
Tan02g2670 . 1 414 C3H Transcription Factor Family AT1G80400 53.8 9.9e-113 404.4
Tan08g2273 . 1 154 C3H Transcription Factor Family AT2G17450 57.4 3.0e-40 162.5
Tan06g1608 . 72 561 C3H Transcription Factor Family AT2G31510 77.2 4.1e-230 794.7
Tan06g1609 . 72 496 C3H Transcription Factor Family AT2G31510 79.5 7.7e-213 737.3
Tan08g1189 . 4 376 C3H Transcription Factor Family AT2G31510 73.8 7.8e-173 604.4
Tan03g1266 . 7 169 C3H Transcription Factor Family AT2G35910 61.8 2.3e-52 203.0
Tan08g1608 . 6 162 C3H Transcription Factor Family AT2G35910 50.9 1.2e-43 174.1
Tan03g0169 . 1 307 C3H Transcription Factor Family AT2G41980 81.8 2.8e-152 535.4
Tan03g0170 . 1 307 C3H Transcription Factor Family AT2G41980 81.8 2.8e-152 535.4
Tan01g0097 . 62 319 C3H Transcription Factor Family AT2G41980 80.6 1.6e-128 456.4
Tan01g0099 . 62 319 C3H Transcription Factor Family AT2G41980 80.6 1.6e-128 456.4
Tan01g0096 . 61 318 C3H Transcription Factor Family AT2G41980 80.6 2.1e-128 456.1
Tan07g0667 . 27 324 C3H Transcription Factor Family AT2G41980 70.8 4.8e-128 454.9
Tan07g0668 . 27 324 C3H Transcription Factor Family AT2G41980 70.8 4.8e-128 454.9
Tan07g0669 . 27 324 C3H Transcription Factor Family AT2G41980 70.8 4.8e-128 454.9
Tan04g0539 . 31 305 C3H Transcription Factor Family AT2G41980 76.2 6.9e-127 451.1
Tan04g0542 . 40 314 C3H Transcription Factor Family AT2G41980 76.2 6.9e-127 451.1
Tan11g1557 . 47 304 C3H Transcription Factor Family AT2G41980 78.7 2.9e-125 445.7
Tan07g1074 . 48 305 C3H Transcription Factor Family AT2G41980 78.3 8.4e-125 444.1
Tan07g1076 . 48 305 C3H Transcription Factor Family AT2G41980 78.3 8.4e-125 444.1
Tan06g1742 . 43 301 C3H Transcription Factor Family AT2G41980 75.7 6.1e-123 438.0
Tan01g0098 . 3 238 C3H Transcription Factor Family AT2G41980 80.9 8.5e-117 417.5
Tan01g0100 . 3 238 C3H Transcription Factor Family AT2G41980 80.9 8.5e-117 417.5
Tan04g0540 . 31 204 C3H Transcription Factor Family AT2G41980 73.3 8.9e-74 274.6
Tan04g0541 . 31 204 C3H Transcription Factor Family AT2G41980 73.3 8.9e-74 274.6
Tan04g0543 . 40 213 C3H Transcription Factor Family AT2G41980 73.3 8.9e-74 274.6
Tan07g1075 . 48 212 C3H Transcription Factor Family AT2G41980 74.3 1.4e-71 267.3
Tan10g0887 . 119 393 C3H Transcription Factor Family AT3G06140 63.1 5.7e-96 348.6
Tan10g0888 . 119 393 C3H Transcription Factor Family AT3G06140 63.1 5.7e-96 348.6
Tan08g1887 . 33 329 C3H Transcription Factor Family AT3G09770 59.2 7.8e-87 318.2
Tan09g2236 . 58 371 C3H Transcription Factor Family AT3G47990 68.1 2.3e-122 436.0
Tan09g2237 . 1 314 C3H Transcription Factor Family AT3G47990 68.1 2.3e-122 436.0
Tan09g2238 . 1 314 C3H Transcription Factor Family AT3G47990 68.1 2.3e-122 436.0
Tan05g2019 . 315 592 C3H Transcription Factor Family AT3G47990 72.4 8.1e-120 427.6
Tan01g5135 . 4 186 C3H Transcription Factor Family AT1G20823 56.8 8.6e-54 207.6
Tan08g2273 . 6 163 C3H Transcription Factor Family AT1G20823 59.4 4.6e-47 185.3
Tan05g1359 . 34 403 C3H Transcription Factor Family AT3G18930 54.4 1.5e-84 310.8
Tan01g2341 . 20 235 C3H Transcription Factor Family AT5G66070 74.1 4.9e-74 275.0
Tan08g1954 . 5 270 C3H Transcription Factor Family AT5G02750 54.5 4.2e-70 262.3
Tan09g1939 . 5 467 C3H Transcription Factor Family AT1G73950 73.7 3.0e-200 695.3
Tan09g1940 . 5 442 C3H Transcription Factor Family AT1G73950 73.7 1.5e-186 649.8
Tan11g1944 . 12 467 C3H Transcription Factor Family AT1G73950 59.3 7.8e-156 547.7
Tan11g1945 . 3 352 C3H Transcription Factor Family AT1G73950 59.5 3.2e-117 419.5
Tan11g1946 . 13 327 C3H Transcription Factor Family AT1G73950 58.2 8.5e-102 368.2
Tan10g1839 . 1 155 C3H Transcription Factor Family AT1G33480 56.1 2.4e-43 173.3
Tan11g1777 . 2 246 C3H Transcription Factor Family AT2G01735 58.6 6.9e-72 268.1
Tan11g1776 . 2 244 C3H Transcription Factor Family AT2G01735 58.7 1.5e-71 266.9
Tan01g1943 . 60 272 C3H Transcription Factor Family AT2G01735 53.5 6.1e-52 201.8
Tan01g1942 . 60 269 C3H Transcription Factor Family AT2G01735 53.8 1.4e-51 200.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002467 0 5 1 1 1 2 4 2 2 2 1 2 2 1 2 3 1 1 3 2 2 2 2 2 2 1 1 7 3 1 61