Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan09g2238 | ATGTTTGTAGATAATGGACTTGCTGCTGGAATGGGTTTAGACTTTGGGTGGCAGCAGAGGTATGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCAGTCCTTGCGCTTCTGCTATATCCATTCCTTTGGGCTTGGACTGCCATTGGTACTGTATGGTTTAGAGAGGCCCATAAATGTCTTCCTGAGCAAGGTCAGAAATGGGGATTCCTAATTTGGTTGCTTTTTAGCTACTGTGCCCTTGTATGCATTGCTTGCATGTCATTGGGAAAGTGGTTAACTCGTAGACAAGCACTCTTGTTTCGGGCGCAACAAGGGATCCCTGTATCAGAATATGGGGTCTTGGTTGACATGATCCGAGTACCTGATTGGGCTTTTGAAGCTGCAGGAATAGAAACAAGAGTAATGGGCCAAGATGCTGCTATATACCATCCCCATCCCGGACTTTACTTGACTCCAGCTCAGAGGGAAGCTGTGGAGGCACTTATTGAGGAACTTCCCAAATTCATGTTAAAGGCTGTTCCAACAGATTGCAGTGAATGTCCTATCTGCTTAGAAGAGTTCCATGTAGGGAATGAGGTTCGTGGCCTCCCTTGTGCTCATAATTTCCATGTAGGATGTATTGACGAGTGGCTTCGACTGAATGTGAAATGCCCTAGATGTCGCTGCTCGGTCTTCCCAAACCTTGACCTCAGTGCTCTGTCCAATCTTCGTTCTGATACTGATAGGCCTTCTGCAAGTGTTGTTATGACCAATCGTTATATAAGATCCCATCCTTTGAGCCAAAGTTATCTGGTGAGATTACAGGGTCTGCTTCGACCTGTTCGCACAGAAAACACTGGTACGCATGGTGATTTAGAGTCTGCTAGTGCTTTTGAAGCTGCTGAGAATGCTGACAACGGGTCTGCCCATGACCAAACTATACCAGAACGGTCTCCCATAAGACCCATGTCTTTGAGTCAGTCCACATCACAACTCTAG | 978 | 46.22 | MFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSVLALLLYPFLWAWTAIGTVWFREAHKCLPEQGQKWGFLIWLLFSYCALVCIACMSLGKWLTRRQALLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGIETRVMGQDAAIYHPHPGLYLTPAQREAVEALIEELPKFMLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRSDTDRPSASVVMTNRYIRSHPLSQSYLVRLQGLLRPVRTENTGTHGDLESASAFEAAENADNGSAHDQTIPERSPIRPMSLSQSTSQL | 325 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 72350026 | 72355203 | + | Tan0004034.3 | Tan09g2238 | 764581 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan09g2238 | 325 | MobiDBLite | consensus disorder prediction | 299 | 325 | - | - | |
Tan09g2238 | 325 | ProSiteProfiles | Zinc finger RING-type profile. | 180 | 221 | IPR001841 | - | |
Tan09g2238 | 325 | SMART | ring_2 | 180 | 220 | IPR001841 | - | |
Tan09g2238 | 325 | FunFam | E3 ubiquitin-protein ligase SIS3 | 148 | 226 | - | - | |
Tan09g2238 | 325 | Pfam | Ring finger domain | 179 | 221 | IPR001841 | - | |
Tan09g2238 | 325 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 149 | 226 | IPR013083 | - | |
Tan09g2238 | 325 | SUPERFAMILY | RING/U-box | 162 | 229 | - | - | |
Tan09g2238 | 325 | MobiDBLite | consensus disorder prediction | 294 | 325 | - | - | |
Tan09g2238 | 325 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SIS3 | 1 | 302 | IPR044793 | GO:0004842(InterPro)|GO:0010182(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan09g2236 | Tan-Chr9:72350026 | Tan09g2238 | Tan-Chr9:72350026 | 1.60E-194 | dispersed | |
Tan09g2237 | Tan-Chr9:72350026 | Tan09g2238 | Tan-Chr9:72350026 | 8.20E-195 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan09g2238 | K16284 | - | csv:101208939 | 605.134 |