Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2238 ATGTTTGTAGATAATGGACTTGCTGCTGGAATGGGTTTAGACTTTGGGTGGCAGCAGAGGTATGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCAGTCCTTGCGCTTCTGCTATATCCATTCCTTTGGGCTTGGACTGCCATTGGTACTGTATGGTTTAGAGAGGCCCATAAATGTCTTCCTGAGCAAGGTCAGAAATGGGGATTCCTAATTTGGTTGCTTTTTAGCTACTGTGCCCTTGTATGCATTGCTTGCATGTCATTGGGAAAGTGGTTAACTCGTAGACAAGCACTCTTGTTTCGGGCGCAACAAGGGATCCCTGTATCAGAATATGGGGTCTTGGTTGACATGATCCGAGTACCTGATTGGGCTTTTGAAGCTGCAGGAATAGAAACAAGAGTAATGGGCCAAGATGCTGCTATATACCATCCCCATCCCGGACTTTACTTGACTCCAGCTCAGAGGGAAGCTGTGGAGGCACTTATTGAGGAACTTCCCAAATTCATGTTAAAGGCTGTTCCAACAGATTGCAGTGAATGTCCTATCTGCTTAGAAGAGTTCCATGTAGGGAATGAGGTTCGTGGCCTCCCTTGTGCTCATAATTTCCATGTAGGATGTATTGACGAGTGGCTTCGACTGAATGTGAAATGCCCTAGATGTCGCTGCTCGGTCTTCCCAAACCTTGACCTCAGTGCTCTGTCCAATCTTCGTTCTGATACTGATAGGCCTTCTGCAAGTGTTGTTATGACCAATCGTTATATAAGATCCCATCCTTTGAGCCAAAGTTATCTGGTGAGATTACAGGGTCTGCTTCGACCTGTTCGCACAGAAAACACTGGTACGCATGGTGATTTAGAGTCTGCTAGTGCTTTTGAAGCTGCTGAGAATGCTGACAACGGGTCTGCCCATGACCAAACTATACCAGAACGGTCTCCCATAAGACCCATGTCTTTGAGTCAGTCCACATCACAACTCTAG 978 46.22 MFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSVLALLLYPFLWAWTAIGTVWFREAHKCLPEQGQKWGFLIWLLFSYCALVCIACMSLGKWLTRRQALLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGIETRVMGQDAAIYHPHPGLYLTPAQREAVEALIEELPKFMLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRSDTDRPSASVVMTNRYIRSHPLSQSYLVRLQGLLRPVRTENTGTHGDLESASAFEAAENADNGSAHDQTIPERSPIRPMSLSQSTSQL 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 72350026 72355203 + Tan0004034.3 Tan09g2238 764581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2238 325 MobiDBLite consensus disorder prediction 299 325 - -
Tan09g2238 325 ProSiteProfiles Zinc finger RING-type profile. 180 221 IPR001841 -
Tan09g2238 325 SMART ring_2 180 220 IPR001841 -
Tan09g2238 325 FunFam E3 ubiquitin-protein ligase SIS3 148 226 - -
Tan09g2238 325 Pfam Ring finger domain 179 221 IPR001841 -
Tan09g2238 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 226 IPR013083 -
Tan09g2238 325 SUPERFAMILY RING/U-box 162 229 - -
Tan09g2238 325 MobiDBLite consensus disorder prediction 294 325 - -
Tan09g2238 325 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 302 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g2236 Tan-Chr9:72350026 Tan09g2238 Tan-Chr9:72350026 1.60E-194 dispersed
Tan09g2237 Tan-Chr9:72350026 Tan09g2238 Tan-Chr9:72350026 8.20E-195 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2238 K16284 - csv:101208939 605.134