Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2242 ATGCCGGGAATTGTCATGGATGAAGTTAATGAAGAAAGGGCTGTGAATAAACACAACGGTTCTTCAATTCACATGGAAGAGTCTTATGGAAACAAGTCACCGAGGAGCGGGTTGAGCCTTCAGAGCCATGGAAGTGTTAATGTTGATTTCCCTGTTGATGGTTTGGTCGATACCTCTATTGAGAAGCTTTATGAAAATGTCTGTGATATGCAAAGTTCGGATCAGTCTCCTTCAAGGCGTAGCTTTGGTTCTGATGGCGAGGAATCCAGGATTGATTCTGAACTGAATCATCTTGTAGGAGGAGAGATGAGGGAGGTAGAGATAATAAAGGAGGAAGACGACATTGTCGAGAGGACTGAAAATTATTTTCCTAGTGATTCTGTGAAAGATTCACCATCTGTTGATAAGAAGGAAAAAACAGAAAATACCCTACCTGGAAGCTCAAAACGTCTTTCTTCTGGAAAAAAAGCTTCTCACTTGCAATTGGACCACGAGACATCTCCAAAATCAAGTCCCAGGGGAAAGGGTGTGTCTGATAAACCCCCTATTAGCAGAAGGAATGAAAAGAATTCGAAAAAAAATAGTCCAGTTGCTTCTCACTCAAAGAAACAGAAAGATTCACCTCTGAAAGGCTCGAAAATACAGAATGGAACTGAGGATTTTAATGAATCAATGATGGATAATCCTGATCTCGGACCCTTTCTACTTAAGCAAGCAAGAAATTTAGTTTCTTCAGGAGAGAATCTGCAGAAAGCTCTTTTATTAGCTCTCCGTGCTGCAAAATCTTTTGAACTATCTGCAAATGGGAAACCCAGCTTGGAACTTGTCATGTGTTTGCATGTCACAGCAGCTATATACTGCAGTCTAGGCCAGTACAGTGAGGCCATACCTCTATTGGAGCATTCCATTGAGATTCCTGCCATCGAGGAAGGCCACGAGCATGCGCTGGCTAAATTTGCAGGTCACATGCAGTTAGGTGATACCTATGCAATGCTGGGCCAGCTGGAAAATTCTCTAATCTGCTATACAACCGGGTTAGAGGTGCAGAAACAAGTCCTAGGAGAAGCAGACCCCCGAGTTGGTGAGACCTATAGGTATTTAGCTGAAGCCCATGTTCAAGCCTTGCAATTTGATGAGGCTGAGAAGTTTTGTCAATTGGCTCTCGATATTCACAAAAATAATGTTGGTCCTGCTTCTCTTGAGGAGGCTGCAGATAGGAGGCTTATGGGCCTCATATGTGAAACAAAAGGAGATCACGAAGCTGCACTTGAGCATCTAGTTTTAGCCAGCATGGCCATGGTGGCAAATGGCCAAGAGACTGATGTGGCTGCAGTTGATTGCAGTATTGGAGACTCGTACTTATCCCTGTCCCGTTATGACGAGGCTGTTTTTGCTTACCAGAAAGCCCTCACTGTTTTCAAGACCACCAAGGGAGAAAACCATCCAGCAGTTGGTTCGGTATATGTTCGTCTTGCTGATTTGTACAACAAGACTGGAAAAATGAGGGAGTCGGTATCATACTGTGAAAATGCCCTTCGAATTTATGAAAAGCCTATCCCTGGGATTCCTCCGGAGGAGATTGCTAGTGGTCTTACTGATGTTGCTGCTATTTATGAATCAATGAATGAAGTTGAGCAAGCAGTCAAATTATTACACAAGGCATTGAAGATATATAATGATGCCCCGGGACAGCAAAACACCGTTGCTGGAATTGAAGCCCAGATGGGTGTCTTGTATTATATGTTAGGGAACTATTCTGAATCTTACGACTCCTTCAAGAATGCAATTCCAAAGCTCCGCAACAGCGGAGAGAAAAAGTCTGCTTTCTTTGGTATAGCCCTTAATCAGATGGGGCTGGCGTGTGTTCAGAAATACGCTATAAACGAAGCTGTGGAGTTATTTGAAGAAGCCAAGAGCATATTAGAGCAAGAATATGGACCTTATCATCCTGATACTCTTGGGGTCTATAGCAACCTTGCTGGAACGTACGATGCAATCGGCAGGTTGGATGATGCAATTGAAATCTTGGAGTATGTTGTTGGCATGCGCGAGGAAAAACTCGGGACAGCGAATCCCGATGTTGACGATGAGAAGAGGAGGTTGTCCGAGTTGTTGAAAGAAGCAGGTAGAGTTCGGAGCCGAAAGGCGAGATCACTCGAGACTCTTCTTGATGCCAATACTCATCCTGTAAACAGTAAAGGTATTAAGGTTTGA 2214 43.63 MPGIVMDEVNEERAVNKHNGSSIHMEESYGNKSPRSGLSLQSHGSVNVDFPVDGLVDTSIEKLYENVCDMQSSDQSPSRRSFGSDGEESRIDSELNHLVGGEMREVEIIKEEDDIVERTENYFPSDSVKDSPSVDKKEKTENTLPGSSKRLSSGKKASHLQLDHETSPKSSPRGKGVSDKPPISRRNEKNSKKNSPVASHSKKQKDSPLKGSKIQNGTEDFNESMMDNPDLGPFLLKQARNLVSSGENLQKALLLALRAAKSFELSANGKPSLELVMCLHVTAAIYCSLGQYSEAIPLLEHSIEIPAIEEGHEHALAKFAGHMQLGDTYAMLGQLENSLICYTTGLEVQKQVLGEADPRVGETYRYLAEAHVQALQFDEAEKFCQLALDIHKNNVGPASLEEAADRRLMGLICETKGDHEAALEHLVLASMAMVANGQETDVAAVDCSIGDSYLSLSRYDEAVFAYQKALTVFKTTKGENHPAVGSVYVRLADLYNKTGKMRESVSYCENALRIYEKPIPGIPPEEIASGLTDVAAIYESMNEVEQAVKLLHKALKIYNDAPGQQNTVAGIEAQMGVLYYMLGNYSESYDSFKNAIPKLRNSGEKKSAFFGIALNQMGLACVQKYAINEAVELFEEAKSILEQEYGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEYVVGMREEKLGTANPDVDDEKRRLSELLKEAGRVRSRKARSLETLLDANTHPVNSKGIKV 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 72381571 72385571 + Tan0019282.1 Tan09g2242 764585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2242 737 MobiDBLite consensus disorder prediction 117 144 - -
Tan09g2242 737 MobiDBLite consensus disorder prediction 156 170 - -
Tan09g2242 737 Gene3D Tetratricopeptide repeat domain 623 726 IPR011990 GO:0005515(InterPro)
Tan09g2242 737 ProSiteProfiles TPR repeat profile. 528 561 IPR019734 GO:0005515(InterPro)
Tan09g2242 737 SUPERFAMILY TPR-like 241 687 IPR011990 GO:0005515(InterPro)
Tan09g2242 737 MobiDBLite consensus disorder prediction 21 46 - -
Tan09g2242 737 Coils Coil 694 714 - -
Tan09g2242 737 SMART tpr_5 528 561 IPR019734 GO:0005515(InterPro)
Tan09g2242 737 SMART tpr_5 653 686 IPR019734 GO:0005515(InterPro)
Tan09g2242 737 SMART tpr_5 611 644 IPR019734 GO:0005515(InterPro)
Tan09g2242 737 SMART tpr_5 443 476 IPR019734 GO:0005515(InterPro)
Tan09g2242 737 SMART tpr_5 569 602 IPR019734 GO:0005515(InterPro)
Tan09g2242 737 SMART tpr_5 361 394 IPR019734 GO:0005515(InterPro)
Tan09g2242 737 SMART tpr_5 485 518 IPR019734 GO:0005515(InterPro)
Tan09g2242 737 SMART tpr_5 276 309 IPR019734 GO:0005515(InterPro)
Tan09g2242 737 SMART tpr_5 319 352 IPR019734 GO:0005515(InterPro)
Tan09g2242 737 Pfam Tetratricopeptide repeat 441 517 - -
Tan09g2242 737 Pfam Tetratricopeptide repeat 364 426 - -
Tan09g2242 737 Pfam Tetratricopeptide repeat 613 679 - -
Tan09g2242 737 MobiDBLite consensus disorder prediction 179 209 - -
Tan09g2242 737 ProSiteProfiles TPR repeat profile. 443 476 IPR019734 GO:0005515(InterPro)
Tan09g2242 737 MobiDBLite consensus disorder prediction 1 46 - -
Tan09g2242 737 MobiDBLite consensus disorder prediction 68 98 - -
Tan09g2242 737 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 729 - -
Tan09g2242 737 Gene3D Tetratricopeptide repeat domain 235 429 IPR011990 GO:0005515(InterPro)
Tan09g2242 737 Gene3D Tetratricopeptide repeat domain 430 609 IPR011990 GO:0005515(InterPro)
Tan09g2242 737 MobiDBLite consensus disorder prediction 117 226 - -
Tan09g2242 737 MobiDBLite consensus disorder prediction 81 98 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2242 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g1762 Tan-Chr6:38784656 Tan09g2242 Tan-Chr9:72381571 3.20E-165 dispersed
Tan09g2242 Tan-Chr9:72381571 Tan09g2243 Tan-Chr9:72381571 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g740 . . Bda06g00593 . . . Bma06g00233 . . . Cma10g00126 Cma11g00097 Car10g00117 Car11g00097 . . Cpe04g01552 Bhi02g00439 Tan09g2242 . . Hepe09g0198 . . Cla06g01660 Cam06g1845 Cec06g1896 Cco06g1901 Clacu06g1804 Cmu06g1745 Cre06g2564 Cone2ag0905 Cone16ag0107 . . . . . . . Blo15g00269 Bda11g01660 . Bpe07g00835 . . . . Cmo10g00132 Cmo11g00097 . . . . . Cpe18g00843 . . . . . . . . . . . . . . Lsi06g01550 Csa01g00154 Chy02g02576 Cme02g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003461 3 3 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 2 2 48