Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2251 ATGGTCATGAGGAGCTTTTCCAGGATATATGGTGGGTTTTCTAGATCAAGAGAGGTCCTAGATGCTGGTGTGCAGCCTTGTCCTACAATGGAAACCATAATTGTCACGCTTGCACATCTCGCTTTACACAGTGACGCAATAGAGTTGGAGGTTGTTTTTATGATGTGTGCAATTTCAGCAATCGATCCTAGTCAAAGGGAATTGGTCTCTGCTATTCTTGATAACCTGGCCAGACAGCTCAATTATTCAGGAAGACAGAAGTACTTGGAGGAACTCATTGGATCACTTCTCTTTTGTTGGGTTACTTGTGGTGTAAGCTTACCTGCACTTATTGAGATAAGGCAGCTTTTTGTCTTGGACGTTGAACCTTGTTACTTTATTCAGTATTGTTGCCACTGGCTTCTTCCTGCTCTTATTCTACGTGGTGATAGTTCCAATCTTGGCTGGATTTCTAATGTTGCTGGCGAACCACTGGAAGCTCTAATTAGAAGCTATTTTGTGCCAATATTTTCTTTTTGTATGGCACTGCATTGCAGCAAGAGATCTGGATGTGAAAAGGGAGCAGCAGCCCTTCAAAGTTCAATGTTGCATTTTGCCAGAATAACTGAGAGTGAAAGAGATATGCTTATAAAGAAACATATGGTGTCCATTATCAGCCAGATCTTAGCTTTAACATCATGTACTTCAGAACCTATGGATCCATTCTTTCCAAAGGATACCATTGTGTTTGCTGTTCGGACAGTTGTTGATGGTTTCTTGGAAATGGAGAACAAGGAAACAGCAATTGGTGTTATTGACAGAATCAACGTTTTCCGTCCAGATAGAGTATTCATGTTTATAGTAGAGATGCACTACAAAATTGCAGAAGCAATCCATCACAGGCATAAATCTCATCGATTGGCAGCAATTGAAGTGCTGATCAATATTCTTGGTCACAGAGCTGCTGTTTCTAGCACTTCAAACTATCTATTCAATTTGATTGGGCAATTTATTGGTAATAATTCGTTACAAGACCAATGTTGTCGCATCTTTTCAACCTTGTTGGAATCTCTCAAATCTAGTCCAAGCAAAGAAATCACTAGAGTCCTCGGAGAACAACTTCAATTTTTGATCTCGAAGTTGGTGGCATGTTGCATCCCCTCTGAAGCTGATAGAGGGTCTCTTGGTGATAGATCGTCTCACCTCTTATCTTTGGTTCGCCAACTCACTATGGATTCTGATGCATCTCTCCATGATTACATTAAAGAACTGGAGCCCTTTCCTGAGATGGATATCTTTGATGATATTAGAAAATTCCATCAGGAACTATGTAGAGGGTACTCTGCAAGGGATCATTTATTGAAAGTAAGTTTAAAAACATTGCATAAGAAGTTGATTGGGGGCCAAGTTTTTCATAGTGAGAATATCCAAAGTATTGATTGGCACAATGATCATGAAGTGGAGCATGCAGTCTGGAAACTTATGCGAATGTGTGGTTCAGAATCTTCAGATGATACAAGTTGTATAAGGGAGTTGGTGTCAGATTTTGTATCTAGGGTTGGTATAGGTGATCCACATTGTGTTGTTTTCCATCTACCTGGGGACTCTAATACCATTCACATTTTTCGGCCTCTTGTTAATGGCAGTGCTTCAGAAATAGACTTAAAGATTGAAACCGGCATATCTGAAGATCTTCTGGTTGAACTTTTAAAACATTTGAAAAGGTACCTGATGGACGACTCTGTTAAAATAGTTGATATGACGTCCCAAGTTCTCCAGGTTCATTCCAAAGGGCTTAACATTAAGCTGGTGGATGGGTACTTGTTGGATCTTGAAAGGAGATTTAAAGCTGAGGGTATTTCAGTGGAAAGTTCCACCGTGTGGGAGACCAATGGTAAAACTTTCGAGAAGTGGATTTGCCCATTAGTATACTCACTAATTGGTTACTCGAATGATGTGATTCTAAGATTATGTCTAGATATTGTGTTGCTAAAAGCTGAAATTGCTGAGCTTCTTTTACCGAGTGTTGTTGTCAATCTAGCTGGAAGAAAGGATTTGGATATTGATCTTCACAAACTAATCTCACTGCAGGTACAAGAACACATATTTGTAGAATCAAACAAGTTGATCAAGTCAATTCAAGTACTTCTGAATACCCTAAATGAACTTCGGCTATATCATGTCATGGAACAATCTGTAGTATCTTTGAGGAAAGATCATTGTAAGGTTAGTTATTACTATTTGGTTTCTTTTAAAAAAAAATACTATATTGAATACTCTTTGGGATTTTGTATCCTTGAACATTTTTCTATCTTTCTTAGGGAGGGCGTTGACTGTACAGTGATACCACCGGTTACACATTGTTTTGTAGCCTCAACATTATCCTACTCAGATTTGCTGTTTTCTAATAGTGCCTCTTTGCTCCTTCAGTCTTCTAAGGCATCAAGTAAGAGCTCAAGATCCCGTTCCACGTCTATTAATTTTAGAGATCCAGTGGCTGCATCAAATGCTTCTGTGATCTCACCATTCTCCTGGGACAAAGTTTATTGGCTTTCCATTGACTACCTCATTGTTGCTAAAGCAGCAATTTATTCTGGTTCATACTTTACCTCTGTTATGTACGTCGAGCATTGGTGTGAAGAGCATTTTGGATGCCTTACCCTGGGGAACCCAGATTTTTCTTTTGTTGAAACGCTACCCCGTCATATTGAAATACTTGTCTCAGCGGTCACTCGAATTAATGAACCTGACAGCTTGTATGGAATTATACGCTCTCACAAGTTGACGTCACAAATCATCACCTTTGAGCACGAGGGAAACTGGAGCAAGGCCCTTGAATATTATGACTTGCGAGTACAATCAGATTCCATGGTTCAAGAGGATGGTGTTGTTAAAAATATTTCTATGGAGAAGCAACCAAAACGTCATCAATCAATTTCTACCTTGGTAGATGTGTCAGGACATTGGAAACCTTATAAGGGTGTTATTAGATCTCTGCAGAAAACTGGTTGTGCACACGTTCTGGATTTGTATTGCCAAGGACTAACATTCCGGGATGACCATGTTCAGCATGATTTAGAGTTCATGGAACTGCAGTATGAAGCTGCCTGGCGTGCAGGAAACTGGGACTTCTCCTTGCTTTATGCAGGACCTGATTCTGGTTCACCAAGTAATCAGATCAAGAATGTTCATTTCAACGAAAACCTGCATAGTTGTTTGCGGGCATTGCAAGAAGGAGACTTTGATGAATTTTACAGAAGGTTCAAAGATTCAAAGCAGGAGTTAGTGTGGTCCATAACTCATGCAAGTGAAGAGAGCACTGACTATATATATTCAACCATAATTAAGCTCCAGATCTTTCATCATCTTGGCATGGCTTGGGGCTTTCGTTGGACAGATTCTGAAGAGTCAAATTTTTTTCACGGGAAGCCGAAAGTGTTCTCAGATCATGTAATTCCCACAATGGACCAGGTTTTGAGGTGTAAGGAATGTATGGTGCAACATCTTTTGCAATCTGCTTCCACCCTTCGCAAGGGATCTAGGTATTCTCAAGCAGCTGCTGCCTTACATGAGTTTAAGTCTCTCTGTCTTCGAGAAGCAGAAGATAATTCAGCATTGTATTGGCTTGGAAGGCTTGAAGAAGCAAAGCTGTTGCGCGCCCAAGGTCGGCACTCAATAGCAATTAGCCTTGCAGAACATGTTTCACAATACTTCCAATCCAATGAGGAAGCTTCAGATGTATTACGCTTGGTTGGGAAGTGGCTGGCTGAAACTAGATCAAGCAATTCAAGAACTATTCTAGAGAAGTACCTAAAACCTGCAGTTTCGCTTGCTGAGGATCAAGAGTTCCTTAATAAGAAATCAGTTGGGAGACAGAGCCAGACTCATTTTCATCTTGCACACTATGCAGATGCTTTGTTTAGGAGTTATGAGGAAAGGCTCAACTCTAATGAATGGCAAGCAGCAATGCGTTTGAGGAAGCATAAGACAATGGAGTTGGAAGCACTCATTAGACGACTAAAAAGTTCAACAAAGGGTGAAAAGACTGACTTTACAGTAAAAATACAAGAATTACAAAAGCAACTTTCCATGGACAGGGAAGAGGCTGACAAATTGCAGGATGACCGAGACAATTTTCTTAGCCTAGCATTAGAAGGATATAAACGATGCTTGGAGGTCGGTGACAAATATGACGTGAGAGTGGTGTTTCGGCTAGTTTCACTGTGGTTCGGTCTTTCTTCTAGGAAAAATGTCATAAAGAACATGCGGAGCACAATTGCTGAGGTTCAATCGTATAAATTTATACCTCTAGTTTACCAAATTGCTTCAAGAATGGGCTGCTTGAAGGATGGTCAAGGACCGAATAATTTTCAGGTAGCCTTGGTTTCTCTAGTCAAAAAAATGGCTTTAGACCATCCTTACCACACTATTCTTCAGCTTCTTGCCCTTGCAAACGGTGATCGTGTCAAAGATAAACAACGCAGCAGAAACTCATTTATTGTGGATATGGACAAAAAACTTGCAGCGGAATATCTATTAAAGGAGTTATCATCCTACCATGGAGCTTTGATCAGACAAGTCAAGCAAATGGTAGAAATCTATATCAAGCTTGCAGAACTGGAGACAAGGAGGGAGGACACTAATAAAAAGATGACACTTCCAAGAGAACTGCGTAGTCTTCGTCCATTGGAACTTGTACCTGTGGTGACGGCTACCTTTCCAGTTGACCGAAGTTGTCAATATCAGGAAGGTTCCTTTCCATATTTTAAAGGCTTGGCTGATACCATTAAGATAATGAATGGCATAAACGCTCCAAAAGTGATTGAATGTGAAGGTTCTGATGGACACATATACAGGCAACTTGCAAAATCAGGAAATGATGATTTGCGTCAAGATGCTGTTATGGAACAATTTTTTGGATTAGTCAACACGTTTCTGCAGAACCATCGAGACACGAAAAGGCGGAGACTAGGAATACGGACATACAAGGTTGTTCCCTTTACTCCAAGTGCTGGTGTTCTTGAATGGGTTGATGGAACTATTCCTCTGGGAGAATATCTTATAGGAAGGCCCGTCATGCATTACTTTTTTCTGGAGAGGTTCTTACAACCAGCTGATTGGTTTGAGAAGAGGCTTGCTTACACTCGAAGTGTGGCTGCTAGTTCAATGGTTGGTTATATTGTTGGCTTAGGAGATCGACATTCCATGAACATTTTGATCGATCAAGCTACGGCTGAAGTAGTTCACATTGATCTGGGAGTTGCCTTTGAACAAGGATTGATGCTTAAGACACCCGAGCGGGTTCCATTCAGGCTTACAAGAGATGTGATTGATGGTATGGGTGTTACTGGAGTGGAAGGGGTTTTCAGAAGATGTTGCGAGGAAACTCTCTCTGTTATGCGGACAAATAAAGAGGCACTGCTGACCATCGTTGAAGTTTTCATCCATGATCCGCTGTATAAATGGGCTTTATCTCCTCTTAAGGCATTGCAGCGTCAAAAGGAAACTGACGATGACCTGGAGACTAGTCTTGAAGGCTCAGAAGATGAATATGAAGGGAATAAAGATGCTGCACGCGCACTGTTGCGAGTCAAACAAAAACTAGATGGATATGAAGATGGCGAAATGAGAAGTGTGCATGGGCAGGTCCAGCAGCTAATACAGGATGCTATCGACCCCGATCGTTTGTGTCACATGTTTCCTGGCTGGGGAGCATGGTTGTGA 5703 40.96 MVMRSFSRIYGGFSRSREVLDAGVQPCPTMETIIVTLAHLALHSDAIELEVVFMMCAISAIDPSQRELVSAILDNLARQLNYSGRQKYLEELIGSLLFCWVTCGVSLPALIEIRQLFVLDVEPCYFIQYCCHWLLPALILRGDSSNLGWISNVAGEPLEALIRSYFVPIFSFCMALHCSKRSGCEKGAAALQSSMLHFARITESERDMLIKKHMVSIISQILALTSCTSEPMDPFFPKDTIVFAVRTVVDGFLEMENKETAIGVIDRINVFRPDRVFMFIVEMHYKIAEAIHHRHKSHRLAAIEVLINILGHRAAVSSTSNYLFNLIGQFIGNNSLQDQCCRIFSTLLESLKSSPSKEITRVLGEQLQFLISKLVACCIPSEADRGSLGDRSSHLLSLVRQLTMDSDASLHDYIKELEPFPEMDIFDDIRKFHQELCRGYSARDHLLKVSLKTLHKKLIGGQVFHSENIQSIDWHNDHEVEHAVWKLMRMCGSESSDDTSCIRELVSDFVSRVGIGDPHCVVFHLPGDSNTIHIFRPLVNGSASEIDLKIETGISEDLLVELLKHLKRYLMDDSVKIVDMTSQVLQVHSKGLNIKLVDGYLLDLERRFKAEGISVESSTVWETNGKTFEKWICPLVYSLIGYSNDVILRLCLDIVLLKAEIAELLLPSVVVNLAGRKDLDIDLHKLISLQVQEHIFVESNKLIKSIQVLLNTLNELRLYHVMEQSVVSLRKDHCKVSYYYLVSFKKKYYIEYSLGFCILEHFSIFLREGVDCTVIPPVTHCFVASTLSYSDLLFSNSASLLLQSSKASSKSSRSRSTSINFRDPVAASNASVISPFSWDKVYWLSIDYLIVAKAAIYSGSYFTSVMYVEHWCEEHFGCLTLGNPDFSFVETLPRHIEILVSAVTRINEPDSLYGIIRSHKLTSQIITFEHEGNWSKALEYYDLRVQSDSMVQEDGVVKNISMEKQPKRHQSISTLVDVSGHWKPYKGVIRSLQKTGCAHVLDLYCQGLTFRDDHVQHDLEFMELQYEAAWRAGNWDFSLLYAGPDSGSPSNQIKNVHFNENLHSCLRALQEGDFDEFYRRFKDSKQELVWSITHASEESTDYIYSTIIKLQIFHHLGMAWGFRWTDSEESNFFHGKPKVFSDHVIPTMDQVLRCKECMVQHLLQSASTLRKGSRYSQAAAALHEFKSLCLREAEDNSALYWLGRLEEAKLLRAQGRHSIAISLAEHVSQYFQSNEEASDVLRLVGKWLAETRSSNSRTILEKYLKPAVSLAEDQEFLNKKSVGRQSQTHFHLAHYADALFRSYEERLNSNEWQAAMRLRKHKTMELEALIRRLKSSTKGEKTDFTVKIQELQKQLSMDREEADKLQDDRDNFLSLALEGYKRCLEVGDKYDVRVVFRLVSLWFGLSSRKNVIKNMRSTIAEVQSYKFIPLVYQIASRMGCLKDGQGPNNFQVALVSLVKKMALDHPYHTILQLLALANGDRVKDKQRSRNSFIVDMDKKLAAEYLLKELSSYHGALIRQVKQMVEIYIKLAELETRREDTNKKMTLPRELRSLRPLELVPVVTATFPVDRSCQYQEGSFPYFKGLADTIKIMNGINAPKVIECEGSDGHIYRQLAKSGNDDLRQDAVMEQFFGLVNTFLQNHRDTKRRRLGIRTYKVVPFTPSAGVLEWVDGTIPLGEYLIGRPVMHYFFLERFLQPADWFEKRLAYTRSVAASSMVGYIVGLGDRHSMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDVIDGMGVTGVEGVFRRCCEETLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKETDDDLETSLEGSEDEYEGNKDAARALLRVKQKLDGYEDGEMRSVHGQVQQLIQDAIDPDRLCHMFPGWGAWL 1900
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 72471666 72546376 - Tan0006726.1 Tan09g2251 764594

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2251 1900 FunFam Serine/threonine-protein kinase ATM 1679 1864 - -
Tan09g2251 1900 SMART pi3k_hr1_6 1612 1864 IPR000403 -
Tan09g2251 1900 Gene3D - 1680 1861 IPR036940 -
Tan09g2251 1900 Pfam FATC domain 1871 1900 IPR003152 GO:0005515(InterPro)
Tan09g2251 1900 ProSitePatterns Phosphatidylinositol 3- and 4-kinases signature 2. 1710 1730 IPR018936 GO:0016301(InterPro)
Tan09g2251 1900 ProSiteProfiles FATC domain profile. 1868 1900 IPR003152 GO:0005515(InterPro)
Tan09g2251 1900 Coils Coil 1523 1543 - -
Tan09g2251 1900 Coils Coil 1348 1368 - -
Tan09g2251 1900 SMART FATC_2 1868 1900 IPR003152 GO:0005515(InterPro)
Tan09g2251 1900 ProSitePatterns Phosphatidylinositol 3- and 4-kinases signature 1. 1615 1630 IPR018936 GO:0016301(InterPro)
Tan09g2251 1900 Pfam Phosphatidylinositol 3- and 4-kinase 1685 1816 IPR000403 -
Tan09g2251 1900 Pfam Phosphatidylinositol 3- and 4-kinase 1617 1673 IPR000403 -
Tan09g2251 1900 CDD PIKKc_ATM 1582 1817 IPR044107 GO:0004674(InterPro)|GO:0006281(InterPro)|GO:0006974(InterPro)
Tan09g2251 1900 ProSiteProfiles FAT domain profile. 850 1479 IPR014009 -
Tan09g2251 1900 FunFam Serine/threonine-protein kinase ATM 1511 1670 - -
Tan09g2251 1900 Gene3D - 1511 1670 - -
Tan09g2251 1900 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 16 1900 IPR038980 GO:0004674(InterPro)|GO:0006974(InterPro)
Tan09g2251 1900 Coils Coil 1823 1843 - -
Tan09g2251 1900 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 1585 1855 IPR000403 -
Tan09g2251 1900 SUPERFAMILY Protein kinase-like (PK-like) 1517 1827 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2251 K04728 - - sly:101253578 1581.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0643 Tan-Chr2:5919060 Tan09g2251 Tan-Chr9:72471666 5.70E-71 dispersed
Tan05g1368 Tan-Chr5:18590167 Tan09g2251 Tan-Chr9:72471666 2.20E-36 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g743 . . . . . . . . . . . . . . Sed12g2440 . Cpe04g01556 Bhi02g00449 Tan09g2251 Cmetu02g0993 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01554 . . Cme02g01970
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002889 1 3 3 2 1 1 5 2 1 2 1 1 1 1 2 2 1 1 4 1 1 1 2 3 3 3 1 1 2 1 54