Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2258 ATGGCCGATCTTTACGGACTCTATCCCCTCGACGATTACTCTTACCAGTCGTCTTCACCGGCGCCGTTGGACAGCCTCCTCGTTCCCGTTAATTATCAAACTTATTCTACTTCTGTAGATTATTTTCACCGGCTTCCGGCTTTTGGATCGGAATACATGCCGTCGGTTTCGTTGGCGGCATCCGATGCCGCTTTTGTTGCGGTTGATATTCAAACAACGCGTGCTTCCGAAGAGGAGTCTGCCGGTGCAATTAGAGCGAAAATTGCTTCTCATCCTCTTTACCCTAAGCTTATCGATGCGTTTGTGGACTGCCAAAAGGTCGGTGCACCGTCGGAGATCGCTAGCATTCTAGGCAAAAGAAACCGTGGAAGTGACATCTGCGAAAGAACTTCCGGCGTTTTAACTTGCTTGGGTGCCGATCCCGATCTCGATGAGTTCATGGAAACATACTGCGGGTTACTGGCCAGGTACAAGCTGGATCTCTCCCAGTCCTTTGTTGAAGCATCTTCCTTCATCAACAACATGGAAATGCAGTTAAACATGTTATGTAATGGCGTCACCAGTGGCTACGCTTCCGTTGAAGCTGCTGCTGGTTCATCAGAAGACGATCTAAGTGTAGGAGAAGTAGAATTACAAGGTTCTTTGCCGGCTAATGAACATCGTGAGCTGAAGGCCCGACTCCTACGCAAGTTTGGTGGTTATATTAGTAGCTTAAAGCAAGAATTCCCAAAAATGAAAAAGAAGGAAAAACTACCGAAGGAAGCTAGACAGATCCTGCTTGACTGGTGGAACATCCATTGCACATGGCCTTACCCCACGGAGACGGACAAAGTCGAATTGGCCGAGTCGACAGGCTTAGACCAGAAACAAATAAGCAACTGGTTCATAAACCAGAGGAAACGACATTGGAAACCATCAGGAAGTATGCAATTTGCTTTTATGCATGGTCTTTACGGACCCCTTATGATGGATGAATGA 978 47.14 MADLYGLYPLDDYSYQSSSPAPLDSLLVPVNYQTYSTSVDYFHRLPAFGSEYMPSVSLAASDAAFVAVDIQTTRASEEESAGAIRAKIASHPLYPKLIDAFVDCQKVGAPSEIASILGKRNRGSDICERTSGVLTCLGADPDLDEFMETYCGLLARYKLDLSQSFVEASSFINNMEMQLNMLCNGVTSGYASVEAAAGSSEDDLSVGEVELQGSLPANEHRELKARLLRKFGGYISSLKQEFPKMKKKEKLPKEARQILLDWWNIHCTWPYPTETDKVELAESTGLDQKQISNWFINQRKRHWKPSGSMQFAFMHGLYGPLMMDE 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 72654040 72658295 + Tan0006969.1 Tan09g2258 764601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2258 325 ProSiteProfiles 'Homeobox' domain profile. 242 305 IPR001356 GO:0003677(InterPro)
Tan09g2258 325 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 137 309 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan09g2258 325 SMART KNOX2_2 133 184 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan09g2258 325 SMART KNOX1_2 82 126 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan09g2258 325 SUPERFAMILY Homeodomain-like 246 319 IPR009057 -
Tan09g2258 325 Gene3D - 247 308 - -
Tan09g2258 325 Pfam Homeobox KN domain 262 301 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan09g2258 325 ProSiteProfiles ELK domain profile. 222 242 IPR005539 GO:0003677(InterPro)
Tan09g2258 325 Pfam KNOX2 domain 136 183 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan09g2258 325 Pfam ELK domain 222 242 IPR005539 GO:0003677(InterPro)
Tan09g2258 325 ProSitePatterns 'Homeobox' domain signature. 280 303 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Tan09g2258 325 SMART ELK_2 222 243 IPR005539 GO:0003677(InterPro)
Tan09g2258 325 SMART HOX_1 244 309 IPR001356 GO:0003677(InterPro)
Tan09g2258 325 CDD homeodomain 256 306 IPR001356 GO:0003677(InterPro)
Tan09g2258 325 Pfam KNOX1 domain 83 118 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2094 Tan-Chr2:90515859 Tan09g2258 Tan-Chr9:72654040 1.00E-84 dispersed
Tan08g0667 Tan-Chr8:6634357 Tan09g2258 Tan-Chr9:72654040 6.20E-65 dispersed
Tan09g2258 Tan-Chr9:72654040 Tan04g1268 Tan-Chr4:12193149 3.70E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28431 PF03791 KNOX2 3.50E-19 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2258 - - - 0.0