Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2259 ATGACTGTAGCTAACGACTCGTTCCGCGCTCCTCTTGAATGGAAGTTCTCTCAGGTCTTCGGCCAACGAATTGCTGGAGAGGATATTCAGGATGTTGATACCATATCTGCAATTGGATTCGATAAGACCGGTGATAACCTTGCCATTGGCGATCGTGGTGGTCGTGTTATTATATTTGAAAGAAACGACGGGAAGGATACTTCAAAAAACTTCCATACGCGGAATAAGTTGGAGCAGTTGAATCTTACTCCTGCTCGTCATCCTGAATACCAATACAAGACTGAATTTCAGAGTCATGAACCTGAGTTTGATTACTTGAAGAGTTTGGAAATTGAAGAGAAGATTAATAAAGTAAAGTGGTGTGTATCACCCAATGGATCTCGTTTCATCCTTTCAACAAATGACAAGACCATTAAACTATGGAAGGTTAAGGAGCATAAGGTGAAAACCGTTAAAGAGATGAACCCCGTTCGATTTGTGAGTTCAGAGAATGCACTTTTGGCAGAAACCAGTTTTACTAGCGATCAAGACAAACTATCTCCTTCCAATGGCTGCCATTGGGAATGGTCAGAAAACATGACAATGAACAAGATTGCTGATCTAGACGATACTTCTCGGAGAAGATGCCGAAAGGTGTATGCTCATGCTCATGATTTTAATATTAACTCCATTTCTAACAATAGTGACGGCGAGACATTTATTTCTGCAGACGACTTGCGAATAAACTTATGGAACCTTGAGATTTGTAATCAGTGTTTCAATATCATTGACATGAAGCCCTCAAACATGGAAGATCTTACAGAGATCATAACGTCGGCTGAATTCCATCCTCTGCACTGTAACCTTCTATCGTACAGCAGCTCAAGGGGTTTTATTCGTCTAGTGGACATGCGCCAGTCTGCATTATGTGATCATAGTGCAATTCTATTACAAGCTGAAGAACTGAATCGACCAAAATCATTTTTTACGGAGATCATTTCATCCATTTCGGATATAAAATTTTCAAGTGATGGGCGGTTTATCATTAGCCGAGATTACATGAATTTAAAGCTTTGGGATATCCACAAGTGTTCTTCTCCAGTCGCAGTATTCAAGGTTCATGAGCACCTGCAACCTAGGTTGTGTGAGCTGTATGATAATGATTCCATATTTGATAGATTTGAATGTTGCCTCAGTGCAGACGGGCTTCACTGTGCAACTGGATCTTATAGCAACCAATTACGGATGTTCTCTTATGGCTTTGGAAGTGCGGAAGGGATCACTACTGAAGTGGGAAAAATTCCGGATAGTTCTAAATTAAAATACAGGAAGCCAAATCTACAAGCTAGTCGGCGGGCTAGAAGATCATCCTTGAGCAATTTGACGCGTGATTTTTTTCGGCACGGCAATGAACATTCAAGCTCAGGAAGTAATGAAACTTCTGTTGACTTGAACTCCAAGTTACTGCATTTAGAGTGGCATCCAACAGAAAATTTAATCGCATGTGCTGCTGGAAGTGGCCTATTCTTGTATTATGCATAA 1521 40.7 MTVANDSFRAPLEWKFSQVFGQRIAGEDIQDVDTISAIGFDKTGDNLAIGDRGGRVIIFERNDGKDTSKNFHTRNKLEQLNLTPARHPEYQYKTEFQSHEPEFDYLKSLEIEEKINKVKWCVSPNGSRFILSTNDKTIKLWKVKEHKVKTVKEMNPVRFVSSENALLAETSFTSDQDKLSPSNGCHWEWSENMTMNKIADLDDTSRRRCRKVYAHAHDFNINSISNNSDGETFISADDLRINLWNLEICNQCFNIIDMKPSNMEDLTEIITSAEFHPLHCNLLSYSSSRGFIRLVDMRQSALCDHSAILLQAEELNRPKSFFTEIISSISDIKFSSDGRFIISRDYMNLKLWDIHKCSSPVAVFKVHEHLQPRLCELYDNDSIFDRFECCLSADGLHCATGSYSNQLRMFSYGFGSAEGITTEVGKIPDSSKLKYRKPNLQASRRARRSSLSNLTRDFFRHGNEHSSSGSNETSVDLNSKLLHLEWHPTENLIACAAGSGLFLYYA 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 72658889 72665464 + Tan0010145.1 Tan09g2259 764602

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2259 506 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 118 146 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Tan09g2259 506 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 475 504 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Tan09g2259 506 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 330 357 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Tan09g2259 506 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 358 383 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Tan09g2259 506 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 273 301 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Tan09g2259 506 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 302 329 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Tan09g2259 506 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 245 272 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Tan09g2259 506 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 217 244 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Tan09g2259 506 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 39 59 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Tan09g2259 506 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 384 410 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Tan09g2259 506 Gene3D - 304 503 IPR015943 GO:0005515(InterPro)
Tan09g2259 506 Gene3D - 23 303 IPR015943 GO:0005515(InterPro)
Tan09g2259 506 Pfam WD domain, G-beta repeat 210 245 IPR001680 GO:0005515(InterPro)
Tan09g2259 506 Pfam WD domain, G-beta repeat 120 141 IPR001680 GO:0005515(InterPro)
Tan09g2259 506 ProSiteProfiles Trp-Asp (WD) repeats profile. 123 151 IPR001680 GO:0005515(InterPro)
Tan09g2259 506 PIRSF PPA2_B55 3 506 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Tan09g2259 506 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 12 506 IPR000009 GO:0000159(InterPro)|GO:0000159(PANTHER)|GO:0005829(PANTHER)|GO:0019888(InterPro)|GO:0019888(PANTHER)
Tan09g2259 506 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 30 189 - -
Tan09g2259 506 SMART WD40_4 206 245 IPR001680 GO:0005515(InterPro)
Tan09g2259 506 SMART WD40_4 380 411 IPR001680 GO:0005515(InterPro)
Tan09g2259 506 SMART WD40_4 25 60 IPR001680 GO:0005515(InterPro)
Tan09g2259 506 SMART WD40_4 102 142 IPR001680 GO:0005515(InterPro)
Tan09g2259 506 SMART WD40_4 315 353 IPR001680 GO:0005515(InterPro)
Tan09g2259 506 SMART WD40_4 468 505 IPR001680 GO:0005515(InterPro)
Tan09g2259 506 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 102 116 IPR018067 -
Tan09g2259 506 SUPERFAMILY WD40 repeat-like 33 502 IPR036322 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2259 K04354 - - csv:101206601 866.685
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0187 Tan-Chr6:1675622 Tan09g2259 Tan-Chr9:72658889 8.50E-162 dispersed
Tan06g0188 Tan-Chr6:1675622 Tan09g2259 Tan-Chr9:72658889 8.80E-136 dispersed
Tan09g2259 Tan-Chr9:72658889 Tan04g2744 Tan-Chr4:86865554 1.40E-161 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g775 . . . . . . . Bma12g01043 . . . Cma11g00090 . Car11g00081 Sed08g0112 . Cpe04g01565 Bhi02g00459 Tan09g2259 Cmetu02g0570 . Hepe09g0209 . . Cla06g01669 Cam06g1857 Cec06g1905 Cco06g1911 Clacu06g1813 Cmu06g1754 Cre06g2572 . . . . . . . . . Blo15g00263 . . Bpe07g00846 . . . . . Cmo11g00089 . . . . . . . . . . . . . . . . . . . . . Csa01g00142 Chy02g02586 Cme02g01984
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007287 0 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 36