Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan09g2289 | ATGGCATCATCAAGTTCTTACAACTCTCCTTGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCAGGTTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTGCACAAGATCTTTGGGGCAAGCAATGTCACAAAGCTGCTCAATGAGCTTCTGCCTCACCAAAGAGAGGATGCAGTGAACTCCCTTGCCTATGAGGCTGAGGCTCGAGTTCGAGACCCGGTCTACGGTTGCGTCGGAGCCATCTCCTTCCTCCAAAGGCAAGTCCAAAGGCTCCAAAAGGAACTCGATGCTGCCAATGCCGACCTAATTCGGTACGCATGCAACGAGATCCCTAATGCAAGTGTGAATCATGTGGTTCAACCAATCATGACCCTTCGCCCGAGGGCGTTGGATCAGTATAATACAAGAAATATTCTTGGAAATGAAGGCTCAACAAGTGGATATTATAATCAACATCATCATCTTCCTGCTTTCCCCATGGCTTATCCACTTCCTTGGAATGAAAATTCTTCTGCAAATAATATCAATGAAGGAGGAGGGGATGCCAATATTTGA | 579 | 45.94 | MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPNASVNHVVQPIMTLRPRALDQYNTRNILGNEGSTSGYYNQHHHLPAFPMAYPLPWNENSSANNINEGGGDANI | 192 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 72856130 | 72856934 | - | Tan0016107.1 | Tan09g2289 | 764632 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan09g2289 | 192 | Coils | Coil | 89 | 116 | - | - | |
Tan09g2289 | 192 | Pfam | Lateral organ boundaries (LOB) domain | 10 | 107 | IPR004883 | - | |
Tan09g2289 | 192 | ProSiteProfiles | LOB domain profile. | 9 | 110 | IPR004883 | - | |
Tan09g2289 | 192 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 8 | 136 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan08g0946 | Tan-Chr8:13911607 | Tan09g2289 | Tan-Chr9:72856130 | 4.70E-46 | dispersed | |
Tan09g2289 | Tan-Chr9:72856130 | Tan11g0653 | Tan-Chr11:5740323 | 9.20E-53 | dispersed | |
Tan03g2752 | Tan-Chr3:80380605 | Tan09g2289 | Tan-Chr9:72856130 | 8.00E-24 | transposed | |
Tan07g1017 | Tan-Chr7:25342397 | Tan09g2289 | Tan-Chr9:72856130 | 8.10E-41 | transposed | |
Tan05g1980 | Tan-Chr5:69437201 | Tan09g2289 | Tan-Chr9:72856130 | 5.10E-53 | wgd | |
Tan07g1392 | Tan-Chr7:64748048 | Tan09g2289 | Tan-Chr9:72856130 | 4.00E-56 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28433 | PF03195 | LOB | 3.10E-42 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan09g2289 | - | - | - | 0.0 |