Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2289 ATGGCATCATCAAGTTCTTACAACTCTCCTTGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCAGGTTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTGCACAAGATCTTTGGGGCAAGCAATGTCACAAAGCTGCTCAATGAGCTTCTGCCTCACCAAAGAGAGGATGCAGTGAACTCCCTTGCCTATGAGGCTGAGGCTCGAGTTCGAGACCCGGTCTACGGTTGCGTCGGAGCCATCTCCTTCCTCCAAAGGCAAGTCCAAAGGCTCCAAAAGGAACTCGATGCTGCCAATGCCGACCTAATTCGGTACGCATGCAACGAGATCCCTAATGCAAGTGTGAATCATGTGGTTCAACCAATCATGACCCTTCGCCCGAGGGCGTTGGATCAGTATAATACAAGAAATATTCTTGGAAATGAAGGCTCAACAAGTGGATATTATAATCAACATCATCATCTTCCTGCTTTCCCCATGGCTTATCCACTTCCTTGGAATGAAAATTCTTCTGCAAATAATATCAATGAAGGAGGAGGGGATGCCAATATTTGA 579 45.94 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPNASVNHVVQPIMTLRPRALDQYNTRNILGNEGSTSGYYNQHHHLPAFPMAYPLPWNENSSANNINEGGGDANI 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 72856130 72856934 - Tan0016107.1 Tan09g2289 764632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2289 192 Coils Coil 89 116 - -
Tan09g2289 192 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Tan09g2289 192 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Tan09g2289 192 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 136 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0946 Tan-Chr8:13911607 Tan09g2289 Tan-Chr9:72856130 4.70E-46 dispersed
Tan09g2289 Tan-Chr9:72856130 Tan11g0653 Tan-Chr11:5740323 9.20E-53 dispersed
Tan03g2752 Tan-Chr3:80380605 Tan09g2289 Tan-Chr9:72856130 8.00E-24 transposed
Tan07g1017 Tan-Chr7:25342397 Tan09g2289 Tan-Chr9:72856130 8.10E-41 transposed
Tan05g1980 Tan-Chr5:69437201 Tan09g2289 Tan-Chr9:72856130 5.10E-53 wgd
Tan07g1392 Tan-Chr7:64748048 Tan09g2289 Tan-Chr9:72856130 4.00E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28433 PF03195 LOB 3.10E-42 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2289 - - - 0.0