Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2304 ATGGCGATGGATCCCAACCCCAAAAGTTTCCCCATCCTTTCTTACGTCATGGCACGAATCCCCTCTCTCAGCCGTCGACCGCCTGCCGCCGAAATCGACCTCGAACAACCTGCATCTCCACTGTCCCGCCACGCTTCCAATCGTCCCTCCGATCCTTCCTCATCCTCCTCCCGAATCGTCGATGACATGCCCCATCTATCGGACCCTAAGGTATTGGCTTCTATGACCAGCGCTATATCTGATGTCGCTCAGACCCGATCCGTTCTCAAAACCCTTGGGGAGAGACCCGACCATGAGGCTGTTGATACTGCAAAGGCTAAGCTCGCTGACGTAGAAGCCAATTTATCCTCCAAGCTCCAGGAAATTGTGCTTTCTTCTAGGCCGGCGGATGTGGAGTTGCTCGACTGGAGAGCTCATCTTGCTGAGAAAGAGAACGAGTGCCGGCAGGCGGCGGATAAAGAGAAGCAGGTCTATAAGGCGATTATGCAATTGGATGAGATGCACGAGGCGTATGAGAAGATGTTGAAGGAAGCTGAGGAGAGGTTGGTGAAGATTTACGAGTCGGCAGAGAGAGGGCTGCCGGAAGAAGAACGCTTCGATCCAGTAAGCGAGGAGGTCAATGAGGAGGTTGCGAAGATTCTTCAGGACGCCAAAGAGAAGGAGATGGATCGAATTAGTCTCTCCGGTCGACGCTTGCGGTTCTTGCCTGAAGAATTTGGACGCATTCGGGGATTGGTTGTGCTTGATATCTCCAGCAATCAACTACAGATTATTCCCGATTCAATATCCGGTTTAGAAAATCTTGAGGAGCTGAATGCCTCATCCAATATTCTGGAGTCATTGCCTGACTCGATTGGCTTATTACAAAAGCTGAAACTCCTGAATGTCTCTGCGAACAAGTTGCAGGCCCTTCCTGACACAATATGCCAGTGCAGGTCTTTGGTGGAGTTAGATGTGAGCTTCAACAGTCTGACGTATTTGCCAACAAATATTGGGCATGAACTGGTGAATTTGCAGAAGTTTTCAATCCAGTTGAACAAGATACGTTCGCTTCCCTCTTCTGTTTGTGGTATGATCTCTTTGCGTTACCTGGATGCTCATTTCAACGAGCTTCATGGCCTTCCTCAGGCAATTGGGAAATTGACACAACTTGAGTATCTCAACCTAAGCAGTAACTTTACTGACCTTACCGAACTTCCACAGACCTTTGGTGATTTATCCAGCCTTAGGGAACTTGATCTTAGCAATAACCAGATTCATTCTCTACCTGATACGTTTGGCTATCTTGAGAATTTAAAGAAACTAAACTTGGAGCAAAACCCTCTTGTAATTCCACCCATGGAAGTTGTAAACAGAGGACCGGATGCTGTGAGGACATTCATGTCGAAGAGGAGGCTTGAAATTCTGGAGGAGGAAGATAGACAAAGAAGTACTCTTGGAATGGAAGAACAGGGACAAACTGGATGGCTGACACGAAGCTCCTCTTGGTTGAAGACTTACGTTTCTGGGGTTACAGAAACTGTATCTGGTATTGTTGGATCTCCTAAAAGTCCGAGAGACCCTTATCTTGATCAGCAGCTATAA 1584 47.73 MAMDPNPKSFPILSYVMARIPSLSRRPPAAEIDLEQPASPLSRHASNRPSDPSSSSSRIVDDMPHLSDPKVLASMTSAISDVAQTRSVLKTLGERPDHEAVDTAKAKLADVEANLSSKLQEIVLSSRPADVELLDWRAHLAEKENECRQAADKEKQVYKAIMQLDEMHEAYEKMLKEAEERLVKIYESAERGLPEEERFDPVSEEVNEEVAKILQDAKEKEMDRISLSGRRLRFLPEEFGRIRGLVVLDISSNQLQIIPDSISGLENLEELNASSNILESLPDSIGLLQKLKLLNVSANKLQALPDTICQCRSLVELDVSFNSLTYLPTNIGHELVNLQKFSIQLNKIRSLPSSVCGMISLRYLDAHFNELHGLPQAIGKLTQLEYLNLSSNFTDLTELPQTFGDLSSLRELDLSNNQIHSLPDTFGYLENLKKLNLEQNPLVIPPMEVVNRGPDAVRTFMSKRRLEILEEEDRQRSTLGMEEQGQTGWLTRSSSWLKTYVSGVTETVSGIVGSPKSPRDPYLDQQL 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 72951311 72956301 + Tan0003198.1 Tan09g2304 764647

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2304 527 FunFam Plant intracellular Ras-group-related LRR protein 9 143 326 - -
Tan09g2304 527 Coils Coil 203 223 - -
Tan09g2304 527 ProSiteProfiles Leucine-rich repeat profile. 408 429 IPR001611 GO:0005515(InterPro)
Tan09g2304 527 Pfam Leucine rich repeat 224 276 IPR001611 GO:0005515(InterPro)
Tan09g2304 527 Pfam Leucine rich repeat 400 442 IPR001611 GO:0005515(InterPro)
Tan09g2304 527 Pfam Leucine rich repeat 312 371 IPR001611 GO:0005515(InterPro)
Tan09g2304 527 Coils Coil 161 188 - -
Tan09g2304 527 PRINTS Leucine-rich repeat signature 406 419 - -
Tan09g2304 527 PRINTS Leucine-rich repeat signature 245 258 - -
Tan09g2304 527 FunFam Plant intracellular Ras-group-related LRR protein 2 330 504 - -
Tan09g2304 527 SUPERFAMILY L domain-like 224 443 - -
Tan09g2304 527 PANTHER LEUCINE-RICH REPEAT-CONTAINING 94 370 IPR050715 GO:0004674(PANTHER)|GO:0007165(PANTHER)
Tan09g2304 527 Gene3D Ribonuclease Inhibitor 397 452 IPR032675 -
Tan09g2304 527 ProSiteProfiles Leucine-rich repeat profile. 267 288 IPR001611 GO:0005515(InterPro)
Tan09g2304 527 SMART LRR_typ_2 406 428 IPR003591 -
Tan09g2304 527 SMART LRR_typ_2 288 311 IPR003591 -
Tan09g2304 527 SMART LRR_typ_2 242 264 IPR003591 -
Tan09g2304 527 SMART LRR_typ_2 381 405 IPR003591 -
Tan09g2304 527 SMART LRR_typ_2 312 334 IPR003591 -
Tan09g2304 527 SMART LRR_typ_2 335 358 IPR003591 -
Tan09g2304 527 SMART LRR_typ_2 429 453 IPR003591 -
Tan09g2304 527 SMART LRR_typ_2 265 287 IPR003591 -
Tan09g2304 527 MobiDBLite consensus disorder prediction 27 64 - -
Tan09g2304 527 SMART LRR_bac_2 406 425 - -
Tan09g2304 527 SMART LRR_bac_2 288 307 - -
Tan09g2304 527 SMART LRR_bac_2 311 330 - -
Tan09g2304 527 SMART LRR_bac_2 265 284 - -
Tan09g2304 527 SMART LRR_bac_2 360 377 - -
Tan09g2304 527 SMART LRR_bac_2 244 261 - -
Tan09g2304 527 SMART LRR_bac_2 381 402 - -
Tan09g2304 527 Coils Coil 133 153 - -
Tan09g2304 527 Gene3D Ribonuclease Inhibitor 325 396 IPR032675 -
Tan09g2304 527 Gene3D Ribonuclease Inhibitor 136 324 IPR032675 -
Tan09g2304 527 Coils Coil 101 121 - -
Tan09g2304 527 MobiDBLite consensus disorder prediction 40 61 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2304 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1304 Tan-Chr4:12909802 Tan09g2304 Tan-Chr9:72951311 9.40E-41 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g820 . . Bda06g00618 Bda15g00540 . . . Bma12g01054 . . Cma10g00093 Cma11g00070 Car10g00082 Car11g00062 Sed08g0451 . Cpe04g01581 Bhi02g00603 Tan09g2304 Cmetu05g0163 . . . . Cla06g01699 Cam06g1886 Cec06g1935 Cco06g1939 Clacu06g1842 Cmu06g1784 . . . Cone13ag0167 Cone19ag0164 . . . . Blo13g00144 Blo15g00251 . . Bpe07g00858 . . Bma08g00083 . Cmo10g00097 Cmo11g00072 . . . . . Cpe18g00869 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006865 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 2 1 1 37