Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2319 ATGGCTTCTACTTCTGCCACTTCAATTTTGAAACCCTTATCCAAGGCAGATTCTTGCCTTCTATCCTTGCCCTCTGTATTCTCCTACAGAGCCCCACACTCTTTTCTCTCTTTCCCTTCCAAATTCATCCCCTTTCACCTTTCTTCTTCTCATTCTTCTGTCTTTTCCCCCTCCAAGAAGAAAACCCATCTTTCGTCTCTAGTTATCTCTGTAGCCCAAGAAGACGACACCATCACCATTGACCAGAAGCTCGGTAGCGACGAAGAAGGGGGACCCCATTGGGAAAATCAAGAGCTCAGTGAGACTGAATCTCGTATTTCTGATTGGGAAGGTGAAGGCGAAGAGGATGGAGGAAGTGAGGCCGAAGGGGGACTTTTGGAGTTGGGTGAGGACGTGGACGAGGAAGAAGAAGGGTCTTATGTCGAACCAAATGAAGATGCTAAATTGTTTGTTGGGAATTTGCCTTATGATGTTGATAGTCAAAAGCTAGCAATGCTCTTTGAGAAGGCTGGAACTGTGGAGATTGCTGAGGTTATTTACAACAGAGAAACAGACCAGAGTCGTGGTTTTGGATTTGTGACGATGAGTACTGTTGAAGAAGCTGAGAAAGCTGTGGATACCTTCAACCGTTATGATTTATCAGGGAGGCTGTTGACTGTTAATAAGGCTGCTCCAAGAGGTTCAAGGCCAGAACGCGCGCCTCGAACATTTCAATCTGTTTGCAGAATCTATGTGGGTAATCTTCCATGGGATGTAGATAATGCACGCCTGGAGCAGGTTTTCAGTGAACATGGTAAAGTAGTAGAGGCTCGGGTTCTTTACGACCGGGACAGTGGCCGTTCTCGTGGCTTTGGCTTTGTGACTATGGCTGATGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGAGTCTAGATGGAAGGGCAATCAGAGTAAATGTTGCAGAGGAAAAACCAAGGCGCAACTTCTGA 978 46.32 MASTSATSILKPLSKADSCLLSLPSVFSYRAPHSFLSFPSKFIPFHLSSSHSSVFSPSKKKTHLSSLVISVAQEDDTITIDQKLGSDEEGGPHWENQELSETESRISDWEGEGEEDGGSEAEGGLLELGEDVDEEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEKAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRPERAPRTFQSVCRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLDGRAIRVNVAEEKPRRNF 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 73040360 73042513 + Tan0012820.1 Tan09g2319 764662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2319 325 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 147 225 IPR000504 GO:0003723(InterPro)
Tan09g2319 325 Gene3D - 79 229 IPR012677 -
Tan09g2319 325 Gene3D - 230 324 IPR012677 -
Tan09g2319 325 SMART rrm1_1 148 221 IPR000504 GO:0003723(InterPro)
Tan09g2319 325 SMART rrm1_1 242 315 IPR000504 GO:0003723(InterPro)
Tan09g2319 325 MobiDBLite consensus disorder prediction 82 123 - -
Tan09g2319 325 SUPERFAMILY RNA-binding domain, RBD 236 323 IPR035979 GO:0003676(InterPro)
Tan09g2319 325 Pfam RNA recognition motif 149 218 IPR000504 GO:0003723(InterPro)
Tan09g2319 325 Pfam RNA recognition motif 243 313 IPR000504 GO:0003723(InterPro)
Tan09g2319 325 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 241 319 IPR000504 GO:0003723(InterPro)
Tan09g2319 325 FunFam 31 kDa ribonucleoprotein, chloroplastic 67 230 - -
Tan09g2319 325 CDD RRM2_NsCP33_like 242 317 IPR048289 -
Tan09g2319 325 SUPERFAMILY RNA-binding domain, RBD 143 235 IPR035979 GO:0003676(InterPro)
Tan09g2319 325 MobiDBLite consensus disorder prediction 108 123 - -
Tan09g2319 325 PANTHER OS02G0815200 PROTEIN 54 323 IPR050502 GO:0003729(PANTHER)|GO:0009535(PANTHER)|GO:1901259(PANTHER)
Tan09g2319 325 FunFam 31 kDa ribonucleoprotein, chloroplastic 231 325 - -
Tan09g2319 325 MobiDBLite consensus disorder prediction 82 107 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2319 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g1875 Tan-Chr8:71052033 Tan09g2319 Tan-Chr9:73040360 2.90E-47 dispersed
Tan08g2319 Tan-Chr8:74493272 Tan09g2319 Tan-Chr9:73040360 4.20E-08 dispersed
Tan09g2044 Tan-Chr9:70948428 Tan09g2319 Tan-Chr9:73040360 9.90E-18 dispersed
Tan09g2319 Tan-Chr9:73040360 Tan10g0624 Tan-Chr10:5111285 6.60E-35 dispersed
Tan10g1835 Tan-Chr10:57569895 Tan09g2319 Tan-Chr9:73040360 3.00E-07 dispersed
Tan11g0922 Tan-Chr11:7485616 Tan09g2319 Tan-Chr9:73040360 1.80E-08 dispersed
Tan09g2319 Tan-Chr9:73040360 Tan05g2362 Tan-Chr5:74980524 3.00E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g866 . . Bda06g00624 . Bpe12g00685 . . Bma12g01062 . . Cma10g00083 Cma11g00062 Car10g00075 Car11g00056 Sed08g0071 . Cpe04g01590 Bhi02g00588 Tan09g2319 Cmetu02g0952 . Hepe09g0089 . . Cla06g01709 Cam06g1898 Cec06g1947 Cco06g1951 Clacu06g1854 Cmu06g1795 Cre06g2610 . . Cone13ag0188 . . . . . Blo13g00155 Blo15g00244 . . Bpe07g00865 . . . . Cmo10g00085 Cmo11g00064 . . . . . Cpe18g00878 . . . . . . . . . . . . . . Lsi06g01603 Csa01g00094 Chy02g02627 Cme02g02026
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008467 1 1 2 1 1 1 2 1 1 0 0 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 0 2 1 2 35