Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2327 ATGCCAATGGATCAAACGACGCCGTTTAAGCACGATCGCGTCACCACTCTCACAATCACAGCTGCCAACATCAGTTGCGTGGCCGCCCACAACGGCCTCCTCTACACCGGCTCCACCAACCAAATCACCGTCTTCGACTTAACCAACCACTTCAACCAAATCGACACTCTCCACACAAACGACGCCGCTTCGGGCTCCGTCAAGTCCATCGCCTTTTCCCCCATTCATTCCAAAGTCTTCACCGCCCACCAGGACTGCAAGATCCGCGTCTGGAAGATCACCGGTTCCAAACGACACCGTCTTCTTGCCACTCTCCCCACGGTCACGGACAGGCTCTGCCGGTTGATTTTGCCGGGGAGTTACGTTCCCGTGCGGCGCCACCGCAAGCGGCTGTGGATTGAGCATTGGGACGCGGTTTCAGGGGTGGTGGTGAGTGGCGGATTTCTGTACTCTGTTTCTTGGGATCGGAGTTTTAAGATTTGGAGCGCTTCGGATCATAAGTGTTTGTCGTCGGTCAATGCTCATCACGATGCGGTCAACGCATTGGCTGTAGCTCGGAACGACGTCGTTTACACCGGCGCTGCTGATGGGGTTATCGGAGTTTGGGAGAGGGAAGGGAAGAACAAGAAGCACTCGTTGGTCAGGACTTTGGACAACCATAAATCTACGGTAAATGCGATAGCGTTGAACGAGGGAGGTTCGGTTTTGTATTCAGGGAGTAGTGACCGTTCGATAATGGTGTGGAAGAAGGATGGGGCAGCAAAACAGATAGCGTTTGTGGAGGCTTTATGGGGTCATGAAGGAGCTGTATTGTGCTTGTACATTGTTCGAGATTTGTTAGTGAGTGGCTCGGAAGATCGGACGGTTAGGATTTGGAGAGGTGATGTCACAAACGGCTACCAATGTGCGGCAGTAATGGAAGGACACGGGTCGCCGGTGAAGTCATTGGTCGTAGTCGGAGCCGGTAAACGGAGTTTTATCTGTAGTGCGAGTTTAGATGGAGAAATAAGAGTTTGGAAAATTTGA 1026 52.44 MPMDQTTPFKHDRVTTLTITAANISCVAAHNGLLYTGSTNQITVFDLTNHFNQIDTLHTNDAASGSVKSIAFSPIHSKVFTAHQDCKIRVWKITGSKRHRLLATLPTVTDRLCRLILPGSYVPVRRHRKRLWIEHWDAVSGVVVSGGFLYSVSWDRSFKIWSASDHKCLSSVNAHHDAVNALAVARNDVVYTGAADGVIGVWEREGKNKKHSLVRTLDNHKSTVNAIALNEGGSVLYSGSSDRSIMVWKKDGAAKQIAFVEALWGHEGAVLCLYIVRDLLVSGSEDRTVRIWRGDVTNGYQCAAVMEGHGSPVKSLVVVGAGKRSFICSASLDGEIRVWKI 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 73067047 73068171 - Tan0003180.1 Tan09g2327 764670

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2327 341 SUPERFAMILY WD40 repeat-like 18 340 IPR036322 GO:0005515(InterPro)
Tan09g2327 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 306 341 IPR001680 GO:0005515(InterPro)
Tan09g2327 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 292 - -
Tan09g2327 341 Gene3D - 4 111 IPR015943 GO:0005515(InterPro)
Tan09g2327 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 172 212 IPR001680 GO:0005515(InterPro)
Tan09g2327 341 Gene3D - 112 212 IPR015943 GO:0005515(InterPro)
Tan09g2327 341 Pfam WD domain, G-beta repeat 301 339 IPR001680 GO:0005515(InterPro)
Tan09g2327 341 Pfam WD domain, G-beta repeat 167 202 IPR001680 GO:0005515(InterPro)
Tan09g2327 341 Pfam WD domain, G-beta repeat 58 91 IPR001680 GO:0005515(InterPro)
Tan09g2327 341 Pfam WD domain, G-beta repeat 213 248 IPR001680 GO:0005515(InterPro)
Tan09g2327 341 Pfam WD domain, G-beta repeat 263 292 IPR001680 GO:0005515(InterPro)
Tan09g2327 341 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 11 341 IPR045182 -
Tan09g2327 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 217 249 - -
Tan09g2327 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 292 IPR001680 GO:0005515(InterPro)
Tan09g2327 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 217 249 IPR001680 GO:0005515(InterPro)
Tan09g2327 341 CDD WD40 14 340 - -
Tan09g2327 341 Gene3D - 213 341 IPR015943 GO:0005515(InterPro)
Tan09g2327 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 306 341 - -
Tan09g2327 341 FunFam BnaA09g28200D protein 122 207 - -
Tan09g2327 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 101 IPR001680 GO:0005515(InterPro)
Tan09g2327 341 PRINTS G protein beta WD-40 repeat signature 236 250 IPR020472 -
Tan09g2327 341 PRINTS G protein beta WD-40 repeat signature 327 341 IPR020472 -
Tan09g2327 341 PRINTS G protein beta WD-40 repeat signature 280 294 IPR020472 -
Tan09g2327 341 SMART WD40_4 53 92 IPR001680 GO:0005515(InterPro)
Tan09g2327 341 SMART WD40_4 10 46 IPR001680 GO:0005515(InterPro)
Tan09g2327 341 SMART WD40_4 299 340 IPR001680 GO:0005515(InterPro)
Tan09g2327 341 SMART WD40_4 210 249 IPR001680 GO:0005515(InterPro)
Tan09g2327 341 SMART WD40_4 125 162 IPR001680 GO:0005515(InterPro)
Tan09g2327 341 SMART WD40_4 256 293 IPR001680 GO:0005515(InterPro)
Tan09g2327 341 SMART WD40_4 165 203 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2327 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0134 Tan-Chr4:875071 Tan09g2327 Tan-Chr9:73067047 1.60E-65 dispersed
Tan09g2327 Tan-Chr9:73067047 Tan11g1584 Tan-Chr11:14785710 2.40E-27 dispersed
Tan09g2327 Tan-Chr9:73067047 Tan02g0857 Tan-Chr2:9505892 3.40E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g871 . . . . . Bpe13g00263 . . . . . . . . . . . Bhi02g00576 Tan09g2327 Cmetu02g1365 . . . . Cla06g01714 . . Cco06g1956 . . Cre06g2615 . . . . . . . . . . . . . . . . . Cmo10g00081 . . . . . . . . . . . . . . Cla01g01398 Cam01g1460 Cec01g1499 . Clacu01g1484 Cmu01g1379 Cre01g1294 . Csa01g00089 Chy02g02631 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003359 2 2 1 1 2 2 1 2 2 1 2 2 2 0 2 3 2 1 0 2 2 2 1 2 2 0 2 2 2 2 49