Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2330 ATGAAAATTAAAGCTATGGAACTGGCTATATGTGAGAACCAAGAAATTAAAGCTCAGCTTGAAGCATTGACAGTTAAAGCTAAGAATGCAGAGGCTGAAAATAAGATGTTGGTTGACCGGTGGATGCTTCAGAAGATGCAGGACGCAGAACGCCTCAATGAGGCGAATGCACTCTATGAAGATATGATTGAACGACTCAAGGCTAGTGGTTTAGAGAAACTTGCTCAGCAACAGGTCGATGGTGTGGTCCGCCAAAGTGAAGAGGGTGCTGAATACTTTGTGGAATCCACTGTACCCTCTGTCTGCAAGCATAGGATCCGTGCTCATGAAGGGGGCTGTGGTACTATATTGTTTGAACATAATTCAGGAAAGTTGATTAGTGGGGGGCAGGACCGAACGGTCAAATTGTGGGATACAAATACTGGATCATTAAGTTCTACTCTACATGGGTGTCTTGGTTCTGTTCTTGATCTTGCAATTACCCATGACAATAGATCTGTCATTGCAGCAAGCAGTTCAAACAACTTATATGCATGGGATGTTGGTTCCGGAAGGGTGCGCCATACGCTTACTGGTCACTCAGACAAAGTATGTGCTGTAGATGTAAGCAAAGTTTCCAGCCGCTATGCTGTGAGTGCTGCTTATGATCGCACCATCAAAATTTGGGATTTACAGAAGGGTTACTGCACCAAGACTCTCATTTTCCACAGCAATTGCAATGCAGTTCGCTTCAGCATGGATGGACAGACCATTTGTTCTGGCCATGTGGATGGAAATCTTCGGTTGTGGGATATTCAAACAGGAAAATTGCTTAGTGAAGTTGCTGGACACTCCCTTGCTGTTACATCTATTTCTTTGTCACGTAATGGCAATACAATATTGACTAGTGGGAGAGATAACTTGCATAATTTATTTGATATTCGATCTTTGGAAGTCTGTGGGACGTTACGGGCATCTGGGAACAGAGTAGCTTCTAATTGGAGTCGTTCTTGCATCAGTCCAGATGACAACCATGTTGCCGCCGGTTCCGCGGATGGATCTGTCCATGTCTGGTCAATATCAAAACATGATATTGTGAGCACCCTGAAAGAGCACACTGCATCTGTTCTGTGTTGTTCATGGAGTGGGCTTGGAAAGCCCCTAGCATCCGCAGACAGAAATGGAATAATATTCACATGGAATTGA 1185 44.14 MKIKAMELAICENQEIKAQLEALTVKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIERLKASGLEKLAQQQVDGVVRQSEEGAEYFVESTVPSVCKHRIRAHEGGCGTILFEHNSGKLISGGQDRTVKLWDTNTGSLSSTLHGCLGSVLDLAITHDNRSVIAASSSNNLYAWDVGSGRVRHTLTGHSDKVCAVDVSKVSSRYAVSAAYDRTIKIWDLQKGYCTKTLIFHSNCNAVRFSMDGQTICSGHVDGNLRLWDIQTGKLLSEVAGHSLAVTSISLSRNGNTILTSGRDNLHNLFDIRSLEVCGTLRASGNRVASNWSRSCISPDDNHVAAGSADGSVHVWSISKHDIVSTLKEHTASVLCCSWSGLGKPLASADRNGIIFTWN 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 73090510 73093869 + Tan0011911.2 Tan09g2330 764673

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2330 394 Gene3D - 4 236 IPR015943 GO:0005515(InterPro)
Tan09g2330 394 Gene3D - 237 394 IPR015943 GO:0005515(InterPro)
Tan09g2330 394 CDD WD40 102 394 - -
Tan09g2330 394 SMART WD40_4 309 352 IPR001680 GO:0005515(InterPro)
Tan09g2330 394 SMART WD40_4 183 223 IPR001680 GO:0005515(InterPro)
Tan09g2330 394 SMART WD40_4 226 264 IPR001680 GO:0005515(InterPro)
Tan09g2330 394 SMART WD40_4 99 138 IPR001680 GO:0005515(InterPro)
Tan09g2330 394 SMART WD40_4 267 306 IPR001680 GO:0005515(InterPro)
Tan09g2330 394 SMART WD40_4 141 180 IPR001680 GO:0005515(InterPro)
Tan09g2330 394 SMART WD40_4 355 394 IPR001680 GO:0005515(InterPro)
Tan09g2330 394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 190 227 - -
Tan09g2330 394 FunFam Autophagy-related protein 16 90 394 - -
Tan09g2330 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 362 394 IPR001680 GO:0005515(InterPro)
Tan09g2330 394 PRINTS G protein beta WD-40 repeat signature 125 139 IPR020472 -
Tan09g2330 394 PRINTS G protein beta WD-40 repeat signature 251 265 IPR020472 -
Tan09g2330 394 PRINTS G protein beta WD-40 repeat signature 210 224 IPR020472 -
Tan09g2330 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 333 361 IPR001680 GO:0005515(InterPro)
Tan09g2330 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 190 232 IPR001680 GO:0005515(InterPro)
Tan09g2330 394 Pfam WD domain, G-beta repeat 101 138 IPR001680 GO:0005515(InterPro)
Tan09g2330 394 Pfam WD domain, G-beta repeat 268 301 IPR001680 GO:0005515(InterPro)
Tan09g2330 394 Pfam WD domain, G-beta repeat 331 352 IPR001680 GO:0005515(InterPro)
Tan09g2330 394 Pfam WD domain, G-beta repeat 185 223 IPR001680 GO:0005515(InterPro)
Tan09g2330 394 Pfam WD domain, G-beta repeat 227 264 IPR001680 GO:0005515(InterPro)
Tan09g2330 394 Pfam WD domain, G-beta repeat 359 394 IPR001680 GO:0005515(InterPro)
Tan09g2330 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 241 273 IPR001680 GO:0005515(InterPro)
Tan09g2330 394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 106 143 - -
Tan09g2330 394 PANTHER AUTOPHAGY PROTEIN 16-LIKE 4 393 IPR045160 GO:0000045(InterPro)|GO:0000045(PANTHER)|GO:0000421(PANTHER)
Tan09g2330 394 ProSitePatterns Trp-Asp (WD) repeats signature. 125 139 IPR019775 -
Tan09g2330 394 Coils Coil 6 40 - -
Tan09g2330 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 106 147 IPR001680 GO:0005515(InterPro)
Tan09g2330 394 SUPERFAMILY WD40 repeat-like 98 394 IPR036322 GO:0005515(InterPro)
Tan09g2330 394 ProSitePatterns Trp-Asp (WD) repeats signature. 210 224 IPR019775 -
Tan09g2330 394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 362 394 - -
Tan09g2330 394 ProSitePatterns Trp-Asp (WD) repeats signature. 251 265 IPR019775 -
Tan09g2330 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 274 309 IPR001680 GO:0005515(InterPro)
Tan09g2330 394 Coils Coil 49 69 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2330 K17890 - - csv:101219308 764.222
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g2330 Tan-Chr9:73090510 Tan04g2671 Tan-Chr4:86062669 7.80E-06 dispersed
Tan09g2329 Tan-Chr9:73090510 Tan09g2330 Tan-Chr9:73090510 1.50E-227 tandem
Tan09g2330 Tan-Chr9:73090510 Tan09g2331 Tan-Chr9:73090510 5.20E-228 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g873 . . Bda06g00626 . . . . Bma12g01063 . . . . . . Sed08g0061 . Cpe04g01594 Bhi02g00574 Tan09g2330 Cmetu06g0240 . Hepe09g0081 . . Cla06g01715 Cam06g1904 Cec06g1954 Cco06g1958 Clacu06g1860 Cmu06g1802 Cre06g2617 Cone2ag0942 Cone16ag0059 . . . . . . . Blo15g00241 . . Bpe07g00867 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01609 Csa01g00087 Chy02g02633 Cme02g02032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009836 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 3 1 32